To combine two structures, use editconf to translate/rotate each first and
combine with a text editor.
----- Original Message ----
From: Sheyore Omovie <[EMAIL PROTECTED]>
To: [email protected]
Sent: Sunday, May 20, 2007 1:22:15 AM
Subject: [gmx-users] Two polypeptides in one box
Hi gromacs users,
I want to simulate interaction between two polypeptides in one box. I have
read Tsjerk response to a similar question. However, i dont know just how to
implement it, i.e how do I position two pdb files using editconf and create
one pdb file. If possible I'll appreciate specific commands on how to
implement this.
I also tried using pymol, but because I'm also new to this software, I could
not figure it out.
Regards
John
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