Volker Knecht wrote:
Dear all,
Does anyone have an idea what is going wrong?
No, but it would straightforward to write a script that used trjconv
while iterating through a set of index files that extract the
coordinates of just one peptide at a time, write that to an intermediate
.xtc file and send that to do_dssp individually. There's no chemical
reason to want do_dssp to do this looping for you, and you may discover
the source of the problem if/when this manual loop breaks.
Mark
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