Hi,
I am new in GROMACS and MD though have some experience of MM and Monte Carlo
simulations. I have looked through the users archive as carefully as I could
but couldn't find the answer to my (probably very simple) question:
how to generate pdb file if your peptide is not in PDB databank? T.e. suppose
I know only the aminoacid sequence and want to do a folding simulation or
simulated annealing starting from some random conformation. Then how to
generate a pdf file for GROMACS? Thanks.
Shura
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