I have used pymol to generate pdb files for simple polypeptides.
You might want to check to see if it will meet your needs.
Rgds
John> From: [EMAIL PROTECTED]> To: [email protected]> Date: Fri, 24 Aug
2007 07:48:27 +0800> Subject: [gmx-users] generation of the pdb file> > > Hi,>
I am new in GROMACS and MD though have some experience of MM and Monte Carlo>
simulations. I have looked through the users archive as carefully as I could>
but couldn't find the answer to my (probably very simple) question: > how to
generate pdb file if your peptide is not in PDB databank? T.e. suppose> I know
only the aminoacid sequence and want to do a folding simulation or> simulated
annealing starting from some random conformation. Then how to> generate a pdf
file for GROMACS? Thanks.> > Shura> > --> Open WebMail Project
(http://www.phys.sinica.edu.tw)> >
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