Hi,
You need to get the topology file from PRODRG together with the PDB file
so you skip pdb2gmx and use the outputs from PRODRG in grompp directly.
Of cource, do whatever you need to add water and ions before grompp.
Regards,
Yang Ye
On 9/5/2007 10:51 AM, Yafei Dai wrote:
I got a pdb file from prodrg2 and I did pdb2gmx:
pdb2gmx -f test.pdb -p test.top -o test.gro
I was told "DRG" not found in residue topology. What can I do for this error
information? My pdb file is as below:
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