sure, here you go,
[EMAIL PROTECTED] ~]$ ldd
/u1/ababakha/gromacs-3.3.1_double_precision_mpi/bin/mdrun_d
libnsl.so.1 => /lib/libnsl.so.1 (0x006e4000)
libm.so.6 => /lib/tls/libm.so.6 (0x00ae3000)
libXm.so.3 => /usr/X11R6/lib/libXm.so.3 (0x0020c000)
libXt.so.6 => /usr/X11R6/lib/libXt.so.6 (0x00111000)
libSM.so.6 => /usr/X11R6/lib/libSM.so.6 (0x00b1e000)
libICE.so.6 => /usr/X11R6/lib/libICE.so.6 (0x00b32000)
libXext.so.6 => /usr/X11R6/lib/libXext.so.6 (0x00b0e000)
libXp.so.6 => /usr/X11R6/lib/libXp.so.6 (0x00443000)
libX11.so.6 => /usr/X11R6/lib/libX11.so.6 (0x03237000)
liblamf77mpi.so.0 => /usr/lib/lam/liblamf77mpi.so.0 (0x00540000)
libmpi.so.0 => /usr/lib/lam/libmpi.so.0 (0x00b5f000)
liblam.so.0 => /usr/lib/lam/liblam.so.0 (0x00162000)
libaio.so.1 => /usr/lib/libaio.so.1 (0x009b1000)
libutil.so.1 => /lib/libutil.so.1 (0x005f1000)
libdl.so.2 => /lib/libdl.so.2 (0x00b08000)
libpthread.so.0 => /lib/tls/libpthread.so.0 (0x00c25000)
libc.so.6 => /lib/tls/libc.so.6 (0x009b5000)
libgcc_s.so.1 => /lib/libgcc_s.so.1 (0x00dc8000)
/lib/ld-linux.so.2 (0x00997000)
libXmu.so.6 => /usr/X11R6/lib/libXmu.so.6 (0x006ff000)
[EMAIL PROTECTED] ~]$
Yang Ye wrote:
this is mostly likely due to mismatched version between runtime
library and compile library. Could you run
ldd full/path/to/mdrun_d
and paste the output here for us to continue our help?
On 9/6/2007 5:43 AM, Arneh Babakhani wrote:
Hi,
I've compiled a mpi double-precision version of mdrun_d. I'm trying
to use it, but I get the following error. Any ideas what the 'symbol
lookup error' is?
----------------------
[EMAIL PROTECTED] Window-1]$ mpirun -np 4 mdrun_d -np 4 -s
UmbrellaMD.tpr -o UmbrellaMD -c AfterUmbrellaMD -e UmbrellaMD -g
UmbrellaMD -pi Window-$number.ppa -pn ../CommonFiles/Pull.ndx
. . .
Reading file UmbrellaMD.tpr, VERSION 3.3.1 (double precision)
mdrun_d: symbol lookup error: mdrun_d: undefined symbol:
_intel_fast_memset
-----------------------------------------------------------------------------
One of the processes started by mpirun has exited with a nonzero exit
code. This typically indicates that the process finished in error.
If your process did not finish in error, be sure to include a "return
0" or "exit(0)" in your C code before exiting the application.
PID 10814 failed on node n0 (127.0.0.1) with exit status 127.
-----------------------------------------------------------------------------
[EMAIL PROTECTED] Window-1]$ which mdrun_d
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