Of course, I am performing a 40 ns simulation, and 14 ns of it has been 
finished. 

What may be the problem? I know, I can extract specific frames via VMD, but it 
changes atom types after saving in pdb format.

-----Original Message-----
From: Ran Friedman <[EMAIL PROTECTED]>
To: Discussion list for GROMACS users <[email protected]>
Date: Mon, 19 Nov 2007 17:53:16 +0100
Subject: Re: [gmx-users] trjconv does not work

I see. Do you have any structure between t=0.1ps and t=0.2ps?

Ran.

OZGE ENGIN wrote:
> The command line ws the following:
>
> trjconv -s peptide_b4md.gro -f traj.xtc -b 0.1 -e 0.2 -o file_1.pdb
>
>   

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