The length of your simulation is irrelevant, the frequency of frame output is. If you don't output frames at least 5x per picosecond, asking for the frames in a 0.1ps gap is not going to produce an output - because there probably won't be any. Check your mdp.
----- Original Message ---- From: OZGE ENGIN <[EMAIL PROTECTED]> To: [email protected] Cc: [email protected] Sent: Monday, November 19, 2007 5:12:51 PM Subject: Re: Re: [gmx-users] trjconv does not work Of course, I am performing a 40 ns simulation, and 14 ns of it has been finished. What may be the problem? I know, I can extract specific frames via VMD, but it changes atom types after saving in pdb format. -----Original Message----- From: Ran Friedman <[EMAIL PROTECTED]> To: Discussion list for GROMACS users <[email protected]> Date: Mon, 19 Nov 2007 17:53:16 +0100 Subject: Re: [gmx-users] trjconv does not work I see. Do you have any structure between t=0.1ps and t=0.2ps? Ran. OZGE ENGIN wrote: > The command line ws the following: > > trjconv -s peptide_b4md.gro -f traj.xtc -b 0.1 -e 0.2 -o file_1.pdb > > _______________________________________________ gmx-users mailing list [email protected] http://www.gromacs.org/mailman/listinfo/gmx-users Please search the archive at http://www.gromacs.org/search before posting! Please don't post (un)subscribe requests to the list. Use the www interface or send it to [EMAIL PROTECTED] Can't post? Read http://www.gromacs.org/mailing_lists/users.php _______________________________________________ gmx-users mailing list [email protected] http://www.gromacs.org/mailman/listinfo/gmx-users Please search the archive at http://www.gromacs.org/search before posting! Please don't post (un)subscribe requests to the list. Use the www interface or send it to [EMAIL PROTECTED] Can't post? Read http://www.gromacs.org/mailing_lists/users.php ____________________________________________________________________________________ Get easy, one-click access to your favorites. Make Yahoo! your homepage. http://www.yahoo.com/r/hs _______________________________________________ gmx-users mailing list [email protected] http://www.gromacs.org/mailman/listinfo/gmx-users Please search the archive at http://www.gromacs.org/search before posting! Please don't post (un)subscribe requests to the list. Use the www interface or send it to [EMAIL PROTECTED] Can't post? Read http://www.gromacs.org/mailing_lists/users.php
