That depends entirely on the system you be simulating. In general
you look at the type of membrane your system sits in and you try to
match it with the lipids available.
You also should look at the parameters that are available. Not all
lipids are as good as they should.
On Thu, 13 Dec 2007 22:48:16 +0800
"liang" <[EMAIL PROTECTED]> wrote:
Dear all,
I am a freshman to membrane protein simulation, and i was wondering how to
choose lipid molecules for my system.
As we know, there are lots of lipid molecules: DMPC, DPPC, POPE.....
but how do people decide that which type of lipid to use? and what kinds of
criteria should we follow?
Thanks so much!
Liang
-----------------------------------------------------
XAvier Periole - PhD
NMR & Molecular Dynamics Group
University of Groningen
The Netherlands
http://md.chem.rug.nl/~periole
-----------------------------------------------------
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