You can do much of the leg work yourself, you know. If you do the Google searching I suggested, you will find freely-available journal articles (Biophysical Journal, others through PubMed) with lots of experimental data.
-Justin Quoting pragya chohan <[EMAIL PROTECTED]>: > > Thanks, but I did get some papers on the analysis done on POPC by MD but I > did not get any experimental papers showing the values so that I can compare > results of my MD with experimental data. > If anyone happens to have such papers please send them to me at > [EMAIL PROTECTED]> Date: Sat, 2 Feb 2008 07:20:54 -0500> From: > [EMAIL PROTECTED]> To: [email protected]> Subject: Re: [gmx-users] > analysis > of POPC> > Quoting pragya chohan <[EMAIL PROTECTED]>:> > >> > hello > users> > I am trying to do analysis after bilayer simulation. I cannot get > any> > experimental data on POPC to validate my model with. Can the people > who are> > working on same lipid tell me some references and also what > analysis should> > be done of the bilayer before putting protein into it?> > > I spent less than two minutes on Google and found papers giving all sorts of> > experimental parameters (density, area per headgroup, bilayer thickness, > etc). > I suggest you try the same.> > In terms of the analysis you need to > do, that is up to what question you are> asking and why you are simulating > this particular lipid. Refer to the> literature and find papers by groups > that have simulated proteins in POPC (and> perhaps proteins in membranes in > general) to determine what they have found> relevant, and apply the same to > your system.> > -Justin> > > > _________________________________________________________________> > Tried > the new MSN Messenger? ItÂ’s cool! Download now.> > > http://messenger.msn.com/Download/Default.aspx?mkt=en-in> > > > > ========================================> > Justin A. Lemkul> Graduate > Research Assistant> Department of Biochemistry> Virginia Tech> Blacksburg, > VA> [EMAIL PROTECTED] | (540) 231-9080> > http://www.bevanlab.biochem.vt.edu/Pages/Personal/justin/> > > ========================================> > _______________________________________________> gmx-users mailing list > [email protected]> http://www.gromacs.org/mailman/listinfo/gmx-users> > Please search the archive at http://www.gromacs.org/search before posting!> > Please don't post (un)subscribe requests to the list. Use the > www interface > or send it to [EMAIL PROTECTED]> Can't post? Read > http://www.gromacs.org/mailing_lists/users.php > _________________________________________________________________ > Post free property ads on Yello Classifieds now! www.yello.in > http://ss1.richmedia.in/recurl.asp?pid=221 ======================================== Justin A. Lemkul Graduate Research Assistant Department of Biochemistry Virginia Tech Blacksburg, VA [EMAIL PROTECTED] | (540) 231-9080 http://www.bevanlab.biochem.vt.edu/Pages/Personal/justin/ ======================================== _______________________________________________ gmx-users mailing list [email protected] http://www.gromacs.org/mailman/listinfo/gmx-users Please search the archive at http://www.gromacs.org/search before posting! Please don't post (un)subscribe requests to the list. Use the www interface or send it to [EMAIL PROTECTED] Can't post? Read http://www.gromacs.org/mailing_lists/users.php
