> thanks for the help... > sorry I made a mistake with flags -f -e in the mail
Right, well there's a lesson for you. Computers are literal, and so tend to be the people who use them well. Copy-and-paste helps you to be literal. Filtering things through your head tends to increase errors. Mark > On Tue, Mar 18, 2008 at 4:43 PM, Mark Abraham <[EMAIL PROTECTED]> > wrote: > >> SWAPNA wrote: >> > Dear gmx users, >> > I am using g_anaeig to filter my traj along the first eigenvector. >> > >> > 'g_anaeig -b 5000 -f 15000 -v eigenvec.trr -f calpha.tpr -s calpha.xtc >> > -first 1 -last 1 -filt alongeigvec1 -dt 100' >> > 5000ps to 15000ps has equilibriated trajectory. So I am using that to >> > perform essential dynamics. >> > >> > When I do this it gives segmentation fault as below >> > ------------ >> > Reading frame 0 time 0.000 Segmentation fault >> > ----------------- >> >> The -f flag doesn't accept a number. >> >> > When I give -b 0 -e 15000 it works without any problem. >> > But it stops reading frames before the end time is 15000. >> > >> > ----------- >> > Reading frame 29000 time 14500.001 >> > ---------- >> > >> > can I get filtered trajectory for -b 5000 -f 15000 ? >> >> No, but you might be able to get one for -b 5000 -e 15000. >> >> Use gmxcheck on the trajectory to see what it contains. >> >> Mark >> _______________________________________________ >> gmx-users mailing list [email protected] >> http://www.gromacs.org/mailman/listinfo/gmx-users >> Please search the archive at http://www.gromacs.org/search before >> posting! >> Please don't post (un)subscribe requests to the list. Use the >> www interface or send it to [EMAIL PROTECTED] >> Can't post? Read http://www.gromacs.org/mailing_lists/users.php >> > > > > -- > The logic of life lies exclusively neither in the most incredible detail, > nor in the most sweeping synopsis. > _______________________________________________ > gmx-users mailing list [email protected] > http://www.gromacs.org/mailman/listinfo/gmx-users > Please search the archive at http://www.gromacs.org/search before posting! > Please don't post (un)subscribe requests to the list. Use the > www interface or send it to [EMAIL PROTECTED] > Can't post? Read http://www.gromacs.org/mailing_lists/users.php _______________________________________________ gmx-users mailing list [email protected] http://www.gromacs.org/mailman/listinfo/gmx-users Please search the archive at http://www.gromacs.org/search before posting! Please don't post (un)subscribe requests to the list. Use the www interface or send it to [EMAIL PROTECTED] Can't post? Read http://www.gromacs.org/mailing_lists/users.php
