shahrbanoo karbalaee wrote:
dear sir/madam

I am doing MD ap peptide with gromacs.this peptide( 13 residue) has a NH2 in c terminal.I change it from heteroatom to atom but it take a error.and it say :I acnnot find C alpha for residue 14 NH2 WHILE COMBINING tdb and rtp.what do i do ?

This is difficult to follow. Please express yourself better.

Mark
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