Quoting Ricardo Soares <[EMAIL PROTECTED]>: > Hello everyone! > > I have a particular amino acid sequence and I wanna build a > custom-shaped protein and make it a pdb file (I'm talking about > non-realistic forms, like squares or a full extended chain). Can anyone > indicate me some software for this task?
The xLeap module of Amber (now available freely as part of AmberTools) allows you to draw a molecule of interest and do a basic energy minimization to generate structures. -Justin > > Thanx! > > -- > ___________________________________________________________ > > Ricardo O. S. Soares > Post-graduation Student in Biological Physics > University of Sao Paulo - USP > Faculty of Farmaceutical Sciences of Ribeirao Preto - FCFRP > Phone: 55 (16) 3602-4840 > Curriculum Lattes - http://lattes.cnpq.br/0777038258459931 > ___________________________________________________________ > > _______________________________________________ > gmx-users mailing list [email protected] > http://www.gromacs.org/mailman/listinfo/gmx-users > Please search the archive at http://www.gromacs.org/search before posting! > Please don't post (un)subscribe requests to the list. Use the > www interface or send it to [EMAIL PROTECTED] > Can't post? Read http://www.gromacs.org/mailing_lists/users.php > ======================================== Justin A. Lemkul Graduate Research Assistant Department of Biochemistry Virginia Tech Blacksburg, VA [EMAIL PROTECTED] | (540) 231-9080 http://www.bevanlab.biochem.vt.edu/Pages/Personal/justin/ ======================================== _______________________________________________ gmx-users mailing list [email protected] http://www.gromacs.org/mailman/listinfo/gmx-users Please search the archive at http://www.gromacs.org/search before posting! Please don't post (un)subscribe requests to the list. Use the www interface or send it to [EMAIL PROTECTED] Can't post? Read http://www.gromacs.org/mailing_lists/users.php
