Dear all,
I have download a POPG(lip 128+Na ion 128)
bilayer from "http://www.softsimu.org/downloads.shtml";. I want to make
a bilayer containing 128 lip/leaflate i.e, with 256 lipids having suqre surface
area (X=Y). With the following commands :
1)"genconf -f popg.pdb -nbox 2 2 1 -dist 0 0 0 -o popc256.pdb"
bilayer becomes 4 times larger with 512 POPG molecules (X=Y).
2)"genconf -f popg.pdb -nbox 2 1 1 -dist 0 0 0 -o popc256.pdb"
bilayer becomes 2 times larger with 256 POPG molecules but, X=2Y.
3)"genconf -f popg.pdb -nbox 1 2 1 -dist 0 0 0 -o popc256.pdb"
bilayer becomes 2 times larger with 256 POPG molecules but,
2X=Y.
please give me any suggestion how I can make a (11*11,i.e 242 lipids )
or (12*12,i.e 288 lipids) bilayer from (8*8,i.e 128
lipids) POPG bilayer.
thanks in advance.
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