Hi All, I want to study and calculate the secondary structure as a function of time of my MD simulated protein. I have no DSSP installed but will use VMD for this.Can any one suggest me which files of MD simulation output I should used? or I need to develop PDB file of the whole MD simulation trajectories? Hoping for an early guidance
SYED LAL BADSHAH M.Phil NCE in Physical Chemistry, University of Peshawar. NWFP,Pakistan. Cell # 03349060632. Send instant messages to your online friends http://uk.messenger.yahoo.com
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