s lal badshah wrote:
Hi All,
I want to study and calculate the secondary structure as a function of
time of my MD simulated protein. I have no DSSP installed but will use
VMD for this.Can any one suggest me which files of MD simulation
output I should used? or I need to develop PDB file of the whole MD
simulation trajectories?
Hoping for an early guidance
Sounds like more trouble than it's worth. DSSP is free, just fill out
the license and download it...Just my $0.02.
-Justin
*SYED LAL BADSHAH
M.Phil
NCE in Physical Chemistry,
University of Peshawar.
NWFP,Pakistan.
Cell # 03349060632.*
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--
========================================
Justin A. Lemkul
Graduate Research Assistant
Department of Biochemistry
Virginia Tech
Blacksburg, VA
jalemkul[at]vt.edu | (540) 231-9080
http://www.bevanlab.biochem.vt.edu/Pages/Personal/justin
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