Thanks a lot for your reply
Actually "maximum internal distance" is not a separate concept it is what
i am getting in the mindist.xvg file shown below
This is the mindist.xvg file:
@ title "Minimum distance to periodic image"
@ xaxis label "Time (ps)"
@ yaxis label "Distance (nm)"
@TYPE xy
@ subtitle "and maximum internal distance"
@ view 0.15, 0.15, 0.75, 0.85
@ legend on
@ legend box on
@ legend loctype view
@ legend 0.78, 0.8
@ legend length 2
@ s0 legend "min per."
@ s1 legend "max int."
@ s2 legend "box1"
@ s3 legend "box2"
@ s4 legend "box3"
0 6.000 0.000 6.000 6.000 6.000
0.5 6.000 0.000 6.000 6.000 6.000
1 6.000 0.000 6.000 6.000 6.000
1.5 6.000 0.000 6.000 6.000 6.000
2 6.000 0.000 6.000 6.000 6.000
2.5 6.000 0.000 6.000 6.000 6.000
So according to the header information the third column (all 0.00) is the
information for maximum internal distance but i am not getting what it
conveys.
Also actually may be i was not able to convey you what i wanted to ask. If
i consider only 2D and the center one is my real box and all other are the
periodic images. so here there are 8 periodic images 4 of them will be of
6nm (since my box is cubic-6nm) but 4 will be of more than 6nm (the
diagonal one). So seeing this i am not able to justify that how could be
the maximum distance will be 6nm.
:-----:-----:-----:
: a : a : a :
:-----:-----:-----:
: a : a : a :
:-----:-----:-----:
: a : a : a :
:-----:-----:-----:
If you could please help me in this.
Thanks
Regards
Alka
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