Hi Alka, This list is not for posing riddles and puzzles, although they may be interesting ;) You should give all relevant information, or think carefully yourself.
Actually, it may be helpful to reformulate your riddle and let you think about it... :p If your cubic box has dimensions of 6 nm and you find a minimal distance of 6 nm between a selection of atoms and its periodic images, what does this say about the selection? If you find a maximal internal distance within a selection of atoms of 0 nm, what does this say about the selection? Have fun, Tsjerk On Wed, Aug 27, 2008 at 8:55 AM, <[EMAIL PROTECTED]> wrote: > Thanks a lot for your reply > > > Actually "maximum internal distance" is not a separate concept it is what > i am getting in the mindist.xvg file shown below > > This is the mindist.xvg file: > > > @ title "Minimum distance to periodic image" > @ xaxis label "Time (ps)" > @ yaxis label "Distance (nm)" > @TYPE xy > @ subtitle "and maximum internal distance" > @ view 0.15, 0.15, 0.75, 0.85 > @ legend on > @ legend box on > @ legend loctype view > @ legend 0.78, 0.8 > @ legend length 2 > @ s0 legend "min per." > @ s1 legend "max int." > @ s2 legend "box1" > @ s3 legend "box2" > @ s4 legend "box3" > 0 6.000 0.000 6.000 6.000 6.000 > 0.5 6.000 0.000 6.000 6.000 6.000 > 1 6.000 0.000 6.000 6.000 6.000 > 1.5 6.000 0.000 6.000 6.000 6.000 > 2 6.000 0.000 6.000 6.000 6.000 > 2.5 6.000 0.000 6.000 6.000 6.000 > > So according to the header information the third column (all 0.00) is the > information for maximum internal distance but i am not getting what it > conveys. > > > Also actually may be i was not able to convey you what i wanted to ask. If > i consider only 2D and the center one is my real box and all other are the > periodic images. so here there are 8 periodic images 4 of them will be of > 6nm (since my box is cubic-6nm) but 4 will be of more than 6nm (the > diagonal one). So seeing this i am not able to justify that how could be > the maximum distance will be 6nm. > > > :-----:-----:-----: > : a : a : a : > :-----:-----:-----: > : a : a : a : > :-----:-----:-----: > : a : a : a : > :-----:-----:-----: > > If you could please help me in this. > > Thanks > > Regards > Alka > > > > > > > > > > > _______________________________________________ > gmx-users mailing list [email protected] > http://www.gromacs.org/mailman/listinfo/gmx-users > Please search the archive at http://www.gromacs.org/search before posting! > Please don't post (un)subscribe requests to the list. Use the > www interface or send it to [EMAIL PROTECTED] > Can't post? Read http://www.gromacs.org/mailing_lists/users.php > -- Tsjerk A. Wassenaar, Ph.D. Junior UD (post-doc) Biomolecular NMR, Bijvoet Center Utrecht University Padualaan 8 3584 CH Utrecht The Netherlands P: +31-30-2539931 F: +31-30-2537623 _______________________________________________ gmx-users mailing list [email protected] http://www.gromacs.org/mailman/listinfo/gmx-users Please search the archive at http://www.gromacs.org/search before posting! Please don't post (un)subscribe requests to the list. Use the www interface or send it to [EMAIL PROTECTED] Can't post? Read http://www.gromacs.org/mailing_lists/users.php
