I tried to install Gromacs on my Core2Quad pc with the command ./configure --enable-mpi --disable-nice --program-suffix="_mpi"
it is showing the following error result: [sand...@bhanu gromacs-4.0.3]$ ./configure --enable-mpi --disable-nice --program -suffix="_mpi" checking build system type... i686-pc-linux-gnu checking host system type... i686-pc-linux-gnu checking for a BSD-compatible install... /usr/bin/install -c checking whether build environment is sane... yes /bin/sh: /home/sandaka/Desktop/all: No such file or directory configure: WARNING: `missing' script is too old or missing checking for a thread-safe mkdir -p... /bin/mkdir -p checking for gawk... gawk checking whether make sets $(MAKE)... yes checking how to create a ustar tar archive... gnutar checking for cc... cc checking for C compiler default output file name... a.out checking whether the C compiler works... yes checking whether we are cross compiling... no checking for suffix of executables... checking for suffix of object files... o checking whether we are using the GNU C compiler... yes checking whether cc accepts -g... yes checking for cc option to accept ISO C89... none needed checking for style of include used by make... GNU checking dependency style of cc... gcc3 checking dependency style of cc... gcc3 checking for mpxlc... no checking for mpicc... mpicc checking whether the MPI cc command works... yes checking for catamount... no checking how to run the C preprocessor... mpicc -E checking whether mpicc accepts -O3... yes checking whether mpicc accepts -funroll-all-loops... yes checking whether mpicc accepts -O3 -fomit-frame-pointer -finline-functions -Wall -Wno-unused -funroll-all-loops... yes checking for grep that handles long lines and -e... /bin/grep checking for egrep... /bin/grep -E checking for ANSI C header files... no checking for sys/types.h... yes checking for sys/stat.h... yes checking for stdlib.h... yes checking for string.h... yes checking for memory.h... yes checking for strings.h... yes checking for inttypes.h... yes checking for stdint.h... yes checking for unistd.h... yes checking whether byte ordering is bigendian... no checking for int... yes checking size of int... configure: error: cannot compute sizeof (int) See `config.log' for more details. Am attaching the config.log file herein. I've Openmpi and fftw already installed and in the path.. Couldn't understand what is the error! -- Never lose hope on the person you love.... they maybe the reason your heart aches today... but they are definitely the reason your heart beats.... : COPIED FROM GMAIL CUSTOM MSGS.
This file contains any messages produced by compilers while running configure, to aid debugging if configure makes a mistake. It was created by gromacs configure 4.0.3, which was generated by GNU Autoconf 2.61. Invocation command line was $ ./configure --enable-mpi --disable-nice --program-suffix=_mpi ## --------- ## ## Platform. ## ## --------- ## hostname = bhanu.prakash uname -m = i686 uname -r = 2.6.23.1-42.fc8 uname -s = Linux uname -v = #1 SMP Tue Oct 30 13:55:12 EDT 2007 /usr/bin/uname -p = unknown /bin/uname -X = unknown /bin/arch = i686 /usr/bin/arch -k = unknown /usr/convex/getsysinfo = unknown /usr/bin/hostinfo = unknown /bin/machine = unknown /usr/bin/oslevel = unknown /bin/universe = unknown PATH: /usr/lib/qt-3.3/bin PATH: /usr/kerberos/bin PATH: /usr/lib/ccache PATH: /usr/local/bin PATH: /usr/bin PATH: /bin PATH: /usr/X11R6/bin PATH: /home/sandaka/bin ## ----------- ## ## Core tests. ## ## ----------- ## configure:2087: checking build system type configure:2105: result: i686-pc-linux-gnu configure:2127: checking host system type configure:2142: result: i686-pc-linux-gnu configure:2180: checking for a BSD-compatible install configure:2236: result: /usr/bin/install -c configure:2247: checking whether build environment is sane configure:2290: result: yes configure:2314: WARNING: `missing' script is too old or missing configure:2318: checking for a thread-safe mkdir -p configure:2357: result: /bin/mkdir -p configure:2370: checking for gawk configure:2386: found /usr/bin/gawk configure:2397: result: gawk configure:2408: checking whether make sets $(MAKE) configure:2429: result: yes configure:2612: checking how to create a ustar tar archive configure:2625: tar --version tar (GNU tar) 1.17 Copyright (C) 2007 Free Software Foundation, Inc. License GPLv2+: GNU GPL version 2 or later <http://gnu.org/licenses/gpl.html> This is free software: you are free to change and redistribute it. There is NO WARRANTY, to the extent permitted by law. Written by John Gilmore and Jay Fenlason. configure:2628: $? = 0 configure:2668: tardir=conftest.dir && eval tar --format=ustar -chf - "$tardir" >conftest.tar configure:2671: $? = 0 configure:2675: tar -xf - <conftest.tar configure:2678: $? = 0 configure:2691: result: gnutar configure:3297: checking for cc configure:3313: found /usr/lib/ccache/cc configure:3324: result: cc configure:3360: checking for C compiler version configure:3367: cc --version >&5 cc (GCC) 4.1.2 20070925 (Red Hat 4.1.2-33) Copyright (C) 2006 Free Software Foundation, Inc. This is free software; see the source for copying conditions. There is NO warranty; not even for MERCHANTABILITY or FITNESS FOR A PARTICULAR PURPOSE. configure:3370: $? = 0 configure:3377: cc -v >&5 Using built-in specs. Target: i386-redhat-linux Configured with: ../configure --prefix=/usr --mandir=/usr/share/man --infodir=/usr/share/info --enable-shared --enable-threads=posix --enable-checking=release --with-system-zlib --enable-__cxa_atexit --disable-libunwind-exceptions --enable-languages=c,c++,objc,obj-c++,java,fortran,ada --enable-java-awt=gtk --disable-dssi --enable-plugin --with-java-home=/usr/lib/jvm/java-1.5.0-gcj-1.5.0.0/jre --enable-libgcj-multifile --enable-java-maintainer-mode --with-ecj-jar=/usr/share/java/eclipse-ecj.jar --with-cpu=generic --host=i386-redhat-linux Thread model: posix gcc version 4.1.2 20070925 (Red Hat 4.1.2-33) configure:3380: $? = 0 configure:3387: cc -V >&5 cc: '-V' option must have argument configure:3390: $? = 1 configure:3413: checking for C compiler default output file name configure:3440: cc conftest.c >&5 configure:3443: $? = 0 configure:3481: result: a.out configure:3498: checking whether the C compiler works configure:3508: ./a.out configure:3511: $? = 0 configure:3528: result: yes configure:3535: checking whether we are cross compiling configure:3537: result: no configure:3540: checking for suffix of executables configure:3547: cc -o conftest conftest.c >&5 configure:3550: $? = 0 configure:3574: result: configure:3580: checking for suffix of object files configure:3606: cc -c conftest.c >&5 configure:3609: $? = 0 configure:3632: result: o configure:3636: checking whether we are using the GNU C compiler configure:3665: cc -c conftest.c >&5 configure:3671: $? = 0 configure:3688: result: yes configure:3693: checking whether cc accepts -g configure:3723: cc -c -g conftest.c >&5 configure:3729: $? = 0 configure:3828: result: yes configure:3845: checking for cc option to accept ISO C89 configure:3919: cc -c -g -O2 conftest.c >&5 configure:3925: $? = 0 configure:3948: result: none needed configure:3977: checking for style of include used by make configure:4005: result: GNU configure:4030: checking dependency style of cc configure:4121: result: gcc3 configure:4419: checking dependency style of cc configure:4510: result: gcc3 configure:4535: checking for mpxlc configure:4565: result: no configure:4535: checking for mpicc configure:4551: found /usr/local/bin/mpicc configure:4562: result: mpicc configure:4576: checking whether the MPI cc command works configure:4600: mpicc -o conftest -g -O2 conftest.c >&5 configure:4606: $? = 0 configure:4612: result: yes configure:4635: checking for catamount configure:4663: mpicc -c -g -O2 conftest.c >&5 conftest.c:19:2: error: #error not catamount configure:4669: $? = 1 configure: failed program was: | /* confdefs.h. */ | #define PACKAGE_NAME "gromacs" | #define PACKAGE_TARNAME "gromacs" | #define PACKAGE_VERSION "4.0.3" | #define PACKAGE_STRING "gromacs 4.0.3" | #define PACKAGE_BUGREPORT "[email protected]" | #define PACKAGE "gromacs" | #define VERSION "4.0.3" | #define GMX_SOFTWARE_SQRT | #define GMX_QMMM_GAUSSIAN | #define BUILD_TIME "Wed May 20 17:06:14 IST 2009" | #define BUILD_USER "[email protected]" | #define BUILD_MACHINE "Linux 2.6.23.1-42.fc8 i686" | #define GMX_MPI | /* end confdefs.h. */ | | #if defined __QK_USER__ | #else | #error not catamount | #endif | | int | main () | { | | ; | return 0; | } configure:4705: result: no configure:5589: checking how to run the C preprocessor configure:5629: mpicc -E conftest.c configure:5635: $? = 0 configure:5666: mpicc -E conftest.c conftest.c:18:28: error: ac_nonexistent.h: No such file or directory configure:5672: $? = 1 configure: failed program was: | /* confdefs.h. */ | #define PACKAGE_NAME "gromacs" | #define PACKAGE_TARNAME "gromacs" | #define PACKAGE_VERSION "4.0.3" | #define PACKAGE_STRING "gromacs 4.0.3" | #define PACKAGE_BUGREPORT "[email protected]" | #define PACKAGE "gromacs" | #define VERSION "4.0.3" | #define GMX_SOFTWARE_SQRT | #define GMX_QMMM_GAUSSIAN | #define BUILD_TIME "Wed May 20 17:06:14 IST 2009" | #define BUILD_USER "[email protected]" | #define BUILD_MACHINE "Linux 2.6.23.1-42.fc8 i686" | #define GMX_MPI | #define F77_OR_C_FUNC(name,NAME) name | #define F77_OR_C_FUNC_(name,NAME) name | /* end confdefs.h. */ | #include <ac_nonexistent.h> configure:5705: result: mpicc -E configure:5734: mpicc -E conftest.c configure:5740: $? = 0 configure:5771: mpicc -E conftest.c conftest.c:18:28: error: ac_nonexistent.h: No such file or directory configure:5777: $? = 1 configure: failed program was: | /* confdefs.h. */ | #define PACKAGE_NAME "gromacs" | #define PACKAGE_TARNAME "gromacs" | #define PACKAGE_VERSION "4.0.3" | #define PACKAGE_STRING "gromacs 4.0.3" | #define PACKAGE_BUGREPORT "[email protected]" | #define PACKAGE "gromacs" | #define VERSION "4.0.3" | #define GMX_SOFTWARE_SQRT | #define GMX_QMMM_GAUSSIAN | #define BUILD_TIME "Wed May 20 17:06:14 IST 2009" | #define BUILD_USER "[email protected]" | #define BUILD_MACHINE "Linux 2.6.23.1-42.fc8 i686" | #define GMX_MPI | #define F77_OR_C_FUNC(name,NAME) name | #define F77_OR_C_FUNC_(name,NAME) name | /* end confdefs.h. */ | #include <ac_nonexistent.h> configure:6202: checking whether mpicc accepts -O3 configure:6220: result: yes configure:6533: checking whether mpicc accepts -funroll-all-loops configure:6551: result: yes configure:6590: checking whether mpicc accepts -O3 -fomit-frame-pointer -finline-functions -Wall -Wno-unused -funroll-all-loops configure:6608: result: yes configure:6700: checking for grep that handles long lines and -e configure:6774: result: /bin/grep configure:6779: checking for egrep configure:6857: result: /bin/grep -E configure:6862: checking for ANSI C header files configure:6900: mpicc -c -O3 -fomit-frame-pointer -finline-functions -Wall -Wno-unused -funroll-all-loops conftest.c >&5 configure:6906: $? = 0 configure:7005: mpicc -o conftest -O3 -fomit-frame-pointer -finline-functions -Wall -Wno-unused -funroll-all-loops conftest.c >&5 configure:7008: $? = 0 configure:7014: ./conftest ./conftest: error while loading shared libraries: libmpi.so.0: cannot open shared object file: No such file or directory configure:7017: $? = 127 configure: program exited with status 127 configure: failed program was: | /* confdefs.h. */ | #define PACKAGE_NAME "gromacs" | #define PACKAGE_TARNAME "gromacs" | #define PACKAGE_VERSION "4.0.3" | #define PACKAGE_STRING "gromacs 4.0.3" | #define PACKAGE_BUGREPORT "[email protected]" | #define PACKAGE "gromacs" | #define VERSION "4.0.3" | #define GMX_SOFTWARE_SQRT | #define GMX_QMMM_GAUSSIAN | #define BUILD_TIME "Wed May 20 17:06:14 IST 2009" | #define BUILD_USER "[email protected]" | #define BUILD_MACHINE "Linux 2.6.23.1-42.fc8 i686" | #define GMX_MPI | #define F77_OR_C_FUNC(name,NAME) name | #define F77_OR_C_FUNC_(name,NAME) name | /* end confdefs.h. */ | #include <ctype.h> | #include <stdlib.h> | #if ((' ' & 0x0FF) == 0x020) | # define ISLOWER(c) ('a' <= (c) && (c) <= 'z') | # define TOUPPER(c) (ISLOWER(c) ? 'A' + ((c) - 'a') : (c)) | #else | # define ISLOWER(c) (('a' <= (c) && (c) <= 'i') || ('j' <= (c) && (c) <= 'r') || ('s' <= (c) && (c) <= 'z')) | # define TOUPPER(c) (ISLOWER(c) ? ((c) | 0x40) : (c)) | #endif | | #define XOR(e, f) (((e) && !(f)) || (!(e) && (f))) | int | main () | { | int i; | for (i = 0; i < 256; i++) | if (XOR (islower (i), ISLOWER (i)) | || toupper (i) != TOUPPER (i)) | return 2; | return 0; | } configure:7034: result: no configure:7058: checking for sys/types.h configure:7079: mpicc -c -O3 -fomit-frame-pointer -finline-functions -Wall -Wno-unused -funroll-all-loops conftest.c >&5 configure:7085: $? = 0 configure:7101: result: yes configure:7058: checking for sys/stat.h configure:7079: mpicc -c -O3 -fomit-frame-pointer -finline-functions -Wall -Wno-unused -funroll-all-loops conftest.c >&5 configure:7085: $? = 0 configure:7101: result: yes configure:7058: checking for stdlib.h configure:7079: mpicc -c -O3 -fomit-frame-pointer -finline-functions -Wall -Wno-unused -funroll-all-loops conftest.c >&5 configure:7085: $? = 0 configure:7101: result: yes configure:7058: checking for string.h configure:7079: mpicc -c -O3 -fomit-frame-pointer -finline-functions -Wall -Wno-unused -funroll-all-loops conftest.c >&5 configure:7085: $? = 0 configure:7101: result: yes configure:7058: checking for memory.h configure:7079: mpicc -c -O3 -fomit-frame-pointer -finline-functions -Wall -Wno-unused -funroll-all-loops conftest.c >&5 configure:7085: $? = 0 configure:7101: result: yes configure:7058: checking for strings.h configure:7079: mpicc -c -O3 -fomit-frame-pointer -finline-functions -Wall -Wno-unused -funroll-all-loops conftest.c >&5 configure:7085: $? = 0 configure:7101: result: yes configure:7058: checking for inttypes.h configure:7079: mpicc -c -O3 -fomit-frame-pointer -finline-functions -Wall -Wno-unused -funroll-all-loops conftest.c >&5 configure:7085: $? = 0 configure:7101: result: yes configure:7058: checking for stdint.h configure:7079: mpicc -c -O3 -fomit-frame-pointer -finline-functions -Wall -Wno-unused -funroll-all-loops conftest.c >&5 configure:7085: $? = 0 configure:7101: result: yes configure:7058: checking for unistd.h configure:7079: mpicc -c -O3 -fomit-frame-pointer -finline-functions -Wall -Wno-unused -funroll-all-loops conftest.c >&5 configure:7085: $? = 0 configure:7101: result: yes configure:7113: checking whether byte ordering is bigendian configure:7154: mpicc -c -O3 -fomit-frame-pointer -finline-functions -Wall -Wno-unused -funroll-all-loops conftest.c >&5 configure:7160: $? = 0 configure:7200: mpicc -c -O3 -fomit-frame-pointer -finline-functions -Wall -Wno-unused -funroll-all-loops conftest.c >&5 conftest.c: In function 'main': conftest.c:42: error: 'not' undeclared (first use in this function) conftest.c:42: error: (Each undeclared identifier is reported only once conftest.c:42: error: for each function it appears in.) conftest.c:42: error: expected ';' before 'big' configure:7206: $? = 1 configure: failed program was: | /* confdefs.h. */ | #define PACKAGE_NAME "gromacs" | #define PACKAGE_TARNAME "gromacs" | #define PACKAGE_VERSION "4.0.3" | #define PACKAGE_STRING "gromacs 4.0.3" | #define PACKAGE_BUGREPORT "[email protected]" | #define PACKAGE "gromacs" | #define VERSION "4.0.3" | #define GMX_SOFTWARE_SQRT | #define GMX_QMMM_GAUSSIAN | #define BUILD_TIME "Wed May 20 17:06:14 IST 2009" | #define BUILD_USER "[email protected]" | #define BUILD_MACHINE "Linux 2.6.23.1-42.fc8 i686" | #define GMX_MPI | #define F77_OR_C_FUNC(name,NAME) name | #define F77_OR_C_FUNC_(name,NAME) name | #define HAVE_SYS_TYPES_H 1 | #define HAVE_SYS_STAT_H 1 | #define HAVE_STDLIB_H 1 | #define HAVE_STRING_H 1 | #define HAVE_MEMORY_H 1 | #define HAVE_STRINGS_H 1 | #define HAVE_INTTYPES_H 1 | #define HAVE_STDINT_H 1 | #define HAVE_UNISTD_H 1 | /* end confdefs.h. */ | #include <sys/types.h> | #include <sys/param.h> | | #ifdef F77_DUMMY_MAIN | | # ifdef __cplusplus | extern "C" | # endif | int F77_DUMMY_MAIN() { return 1; } | | #endif | int | main () | { | #if BYTE_ORDER != BIG_ENDIAN | not big endian | #endif | | ; | return 0; | } configure:7362: result: no configure:7385: checking for int configure:7423: mpicc -c -O3 -fomit-frame-pointer -finline-functions -Wall -Wno-unused -funroll-all-loops conftest.c >&5 configure:7429: $? = 0 configure:7444: result: yes configure:7451: checking size of int configure:7801: mpicc -o conftest -O3 -fomit-frame-pointer -finline-functions -Wall -Wno-unused -funroll-all-loops conftest.c >&5 configure:7804: $? = 0 configure:7810: ./conftest ./conftest: error while loading shared libraries: libmpi.so.0: cannot open shared object file: No such file or directory configure:7813: $? = 127 configure: program exited with status 127 configure: failed program was: | /* confdefs.h. */ | #define PACKAGE_NAME "gromacs" | #define PACKAGE_TARNAME "gromacs" | #define PACKAGE_VERSION "4.0.3" | #define PACKAGE_STRING "gromacs 4.0.3" | #define PACKAGE_BUGREPORT "[email protected]" | #define PACKAGE "gromacs" | #define VERSION "4.0.3" | #define GMX_SOFTWARE_SQRT | #define GMX_QMMM_GAUSSIAN | #define BUILD_TIME "Wed May 20 17:06:14 IST 2009" | #define BUILD_USER "[email protected]" | #define BUILD_MACHINE "Linux 2.6.23.1-42.fc8 i686" | #define GMX_MPI | #define F77_OR_C_FUNC(name,NAME) name | #define F77_OR_C_FUNC_(name,NAME) name | #define HAVE_SYS_TYPES_H 1 | #define HAVE_SYS_STAT_H 1 | #define HAVE_STDLIB_H 1 | #define HAVE_STRING_H 1 | #define HAVE_MEMORY_H 1 | #define HAVE_STRINGS_H 1 | #define HAVE_INTTYPES_H 1 | #define HAVE_STDINT_H 1 | #define HAVE_UNISTD_H 1 | /* end confdefs.h. */ | #include <stdio.h> | #ifdef HAVE_SYS_TYPES_H | # include <sys/types.h> | #endif | #ifdef HAVE_SYS_STAT_H | # include <sys/stat.h> | #endif | #ifdef STDC_HEADERS | # include <stdlib.h> | # include <stddef.h> | #else | # ifdef HAVE_STDLIB_H | # include <stdlib.h> | # endif | #endif | #ifdef HAVE_STRING_H | # if !defined STDC_HEADERS && defined HAVE_MEMORY_H | # include <memory.h> | # endif | # include <string.h> | #endif | #ifdef HAVE_STRINGS_H | # include <strings.h> | #endif | #ifdef HAVE_INTTYPES_H | # include <inttypes.h> | #endif | #ifdef HAVE_STDINT_H | # include <stdint.h> | #endif | #ifdef HAVE_UNISTD_H | # include <unistd.h> | #endif | typedef int ac__type_sizeof_; | static long int longval () { return (long int) (sizeof (ac__type_sizeof_)); } | static unsigned long int ulongval () { return (long int) (sizeof (ac__type_sizeof_)); } | #include <stdio.h> | #include <stdlib.h> | #ifdef F77_DUMMY_MAIN | | # ifdef __cplusplus | extern "C" | # endif | int F77_DUMMY_MAIN() { return 1; } | | #endif | int | main () | { | | FILE *f = fopen ("conftest.val", "w"); | if (! f) | return 1; | if (((long int) (sizeof (ac__type_sizeof_))) < 0) | { | long int i = longval (); | if (i != ((long int) (sizeof (ac__type_sizeof_)))) | return 1; | fprintf (f, "%ld\n", i); | } | else | { | unsigned long int i = ulongval (); | if (i != ((long int) (sizeof (ac__type_sizeof_)))) | return 1; | fprintf (f, "%lu\n", i); | } | return ferror (f) || fclose (f) != 0; | | ; | return 0; | } configure:7824: error: cannot compute sizeof (int) See `config.log' for more details. ## ---------------- ## ## Cache variables. ## ## ---------------- ## ac_cv_build=i686-pc-linux-gnu ac_cv_c_bigendian=no ac_cv_c_compiler_gnu=yes ac_cv_env_CCASFLAGS_set= ac_cv_env_CCASFLAGS_value= ac_cv_env_CCAS_set= ac_cv_env_CCAS_value= ac_cv_env_CCC_set= ac_cv_env_CCC_value= ac_cv_env_CC_set= ac_cv_env_CC_value= ac_cv_env_CFLAGS_set= ac_cv_env_CFLAGS_value= ac_cv_env_CPPFLAGS_set= ac_cv_env_CPPFLAGS_value= ac_cv_env_CPP_set= ac_cv_env_CPP_value= ac_cv_env_CXXCPP_set= ac_cv_env_CXXCPP_value= ac_cv_env_CXXFLAGS_set= ac_cv_env_CXXFLAGS_value= ac_cv_env_CXX_set= ac_cv_env_CXX_value= ac_cv_env_F77_set= ac_cv_env_F77_value= ac_cv_env_FFLAGS_set= ac_cv_env_FFLAGS_value= ac_cv_env_LDFLAGS_set= ac_cv_env_LDFLAGS_value= ac_cv_env_LIBS_set= ac_cv_env_LIBS_value= ac_cv_env_XMKMF_set= ac_cv_env_XMKMF_value= ac_cv_env_build_alias_set= ac_cv_env_build_alias_value= ac_cv_env_host_alias_set= ac_cv_env_host_alias_value= ac_cv_env_target_alias_set= ac_cv_env_target_alias_value= ac_cv_header_inttypes_h=yes ac_cv_header_memory_h=yes ac_cv_header_stdc=no ac_cv_header_stdint_h=yes ac_cv_header_stdlib_h=yes ac_cv_header_string_h=yes ac_cv_header_strings_h=yes ac_cv_header_sys_stat_h=yes ac_cv_header_sys_types_h=yes ac_cv_header_unistd_h=yes ac_cv_host=i686-pc-linux-gnu ac_cv_objext=o ac_cv_path_EGREP='/bin/grep -E' ac_cv_path_GREP=/bin/grep ac_cv_path_install='/usr/bin/install -c' ac_cv_path_mkdir=/bin/mkdir ac_cv_prog_AWK=gawk ac_cv_prog_CPP='mpicc -E' ac_cv_prog_MPICC=mpicc ac_cv_prog_ac_ct_CC=cc ac_cv_prog_cc_c89= ac_cv_prog_cc_g=yes ac_cv_prog_make_make_set=yes ac_cv_type_int=yes am_cv_CCAS_dependencies_compiler_type=gcc3 am_cv_CC_dependencies_compiler_type=gcc3 am_cv_prog_tar_ustar=gnutar ## ----------------- ## ## Output variables. ## ## ----------------- ## ACLOCAL='aclocal-1.10' AMDEPBACKSLASH='\' AMDEP_FALSE='#' AMDEP_TRUE='' AMTAR='tar' AR='' AS='' ASFLAGS=' -O3 -fomit-frame-pointer -finline-functions -Wall -Wno-unused -funroll-all-loops' AUTOCONF='autoconf' AUTOHEADER='autoheader' AUTOMAKE='automake-1.10' AWK='gawk' CC='mpicc' CCAS='cc' CCASDEPMODE='depmode=gcc3' CCASFLAGS='-g -O2' CCDEPMODE='depmode=gcc3' CC_FOR_BUILD='cc' CFLAGS=' -O3 -fomit-frame-pointer -finline-functions -Wall -Wno-unused -funroll-all-loops' CPP='mpicc -E' CPPFLAGS='' CXX='' CXXCPP='' CXXDEPMODE='' CXXFLAGS='' CYGPATH_W='echo' DEFS='' DEPDIR='.deps' DLLTOOL='' ECHO='echo' ECHO_C='' ECHO_N='-n' ECHO_T='' EGREP='/bin/grep -E' EXEEXT='' F77='' F77LINK='$(LINK)' FFLAGS='' FLIBS='' GMXANA_LIBOBJS='' GMXLIB_LIBOBJS='' GMX_BLUEGENE_FALSE='' GMX_BLUEGENE_TRUE='' GMX_DOUBLE_FALSE='' GMX_DOUBLE_TRUE='#' GMX_EXTERNAL_BLAS_FALSE='' GMX_EXTERNAL_BLAS_TRUE='#' GMX_EXTERNAL_LAPACK_FALSE='' GMX_EXTERNAL_LAPACK_TRUE='#' GMX_FORTRAN_FALSE='' GMX_FORTRAN_TRUE='#' GMX_IA32_3DNOW_FALSE='' GMX_IA32_3DNOW_TRUE='' GMX_IA32_SSE2_FALSE='' GMX_IA32_SSE2_TRUE='' GMX_IA32_SSE_FALSE='' GMX_IA32_SSE_TRUE='' GMX_IA64_ASM_DOUBLE_FALSE='' GMX_IA64_ASM_DOUBLE_TRUE='' GMX_IA64_ASM_SINGLE_FALSE='' GMX_IA64_ASM_SINGLE_TRUE='' GMX_POWERPC_SQRT_FALSE='' GMX_POWERPC_SQRT_SINGLE_ITERATION_FALSE='' GMX_POWERPC_SQRT_SINGLE_ITERATION_TRUE='#' GMX_POWERPC_SQRT_TRUE='#' GMX_PPC_ALTIVEC_FALSE='' GMX_PPC_ALTIVEC_TRUE='' GMX_PREFETCH_FORCES_FALSE='' GMX_PREFETCH_FORCES_TRUE='#' GMX_SOFTWARE_SQRT_FALSE='#' GMX_SOFTWARE_SQRT_TRUE='' GMX_X86_64_SSE2_FALSE='' GMX_X86_64_SSE2_TRUE='' GMX_X86_64_SSE_FALSE='' GMX_X86_64_SSE_TRUE='' GREP='/bin/grep' INCLUDES='' INSTALL_DATA='${INSTALL} -m 644' INSTALL_PROGRAM='${INSTALL}' INSTALL_SCRIPT='${INSTALL}' INSTALL_STRIP_PROGRAM='$(install_sh) -c -s' LDFLAGS=' ' LIBOBJS='' LIBS='' LIBSUFFIX='' LIBTOOL='' LN_S='' LTLIBOBJS='' MAKEINFO='makeinfo' MDLIB_LIBOBJS=' qm_gaussian.lo' MPICC='mpicc' OBJDUMP='' OBJEXT='o' PACKAGE='gromacs' PACKAGE_BUGREPORT='[email protected]' PACKAGE_NAME='gromacs' PACKAGE_STRING='gromacs 4.0.3' PACKAGE_TARNAME='gromacs' PACKAGE_VERSION='4.0.3' PATH_SEPARATOR=':' RANLIB='' RPM='' SET_MAKE='' SHARED_VERSION_INFO='5:0:0' SHELL='/bin/sh' STRIP='' USE_X11_FALSE='' USE_X11_TRUE='' VERSION='4.0.3' XMKMF='' X_CFLAGS='' X_EXTRA_LIBS='' X_LIBS='' X_PRE_LIBS='' ac_ct_CC='cc' ac_ct_CXX='' ac_ct_F77='' am__fastdepCCAS_FALSE='#' am__fastdepCCAS_TRUE='' am__fastdepCC_FALSE='#' am__fastdepCC_TRUE='' am__fastdepCXX_FALSE='' am__fastdepCXX_TRUE='' am__include='include' am__isrc='' am__leading_dot='.' am__quote='' am__tar='tar --format=ustar -chf - "$$tardir"' am__untar='tar -xf -' bindir='${exec_prefix}/bin' build='i686-pc-linux-gnu' build_alias='' build_cpu='i686' build_os='linux-gnu' build_vendor='pc' datadir='${datarootdir}' datarootdir='${prefix}/share' docdir='${datarootdir}/doc/${PACKAGE_TARNAME}' dvidir='${docdir}' exec_prefix='NONE' host='i686-pc-linux-gnu' host_alias='' host_cpu='i686' host_os='linux-gnu' host_vendor='pc' htmldir='${docdir}' includedir='${prefix}/include' infodir='${datarootdir}/info' install_sh='$(SHELL) /home/sandaka/Desktop/all desktopfiles/untitled folder/gromacs-4.0.3/gromacs-4.0.3/config/install-sh' libdir='${exec_prefix}/lib' libexecdir='${exec_prefix}/libexec' localedir='${datarootdir}/locale' localstatedir='${prefix}/var' mandir='${datarootdir}/man' mkdir_p='/bin/mkdir -p' oldincludedir='/usr/include' pdfdir='${docdir}' prefix='NONE' program_transform_name='s&$$&_mpi&' psdir='${docdir}' sbindir='${exec_prefix}/sbin' sharedstatedir='${prefix}/com' sysconfdir='${prefix}/etc' target_alias='' ## ----------- ## ## confdefs.h. ## ## ----------- ## #define PACKAGE_NAME "gromacs" #define PACKAGE_TARNAME "gromacs" #define PACKAGE_VERSION "4.0.3" #define PACKAGE_STRING "gromacs 4.0.3" #define PACKAGE_BUGREPORT "[email protected]" #define PACKAGE "gromacs" #define VERSION "4.0.3" #define GMX_SOFTWARE_SQRT #define GMX_QMMM_GAUSSIAN #define BUILD_TIME "Wed May 20 17:06:14 IST 2009" #define BUILD_USER "[email protected]" #define BUILD_MACHINE "Linux 2.6.23.1-42.fc8 i686" #define GMX_MPI #define F77_OR_C_FUNC(name,NAME) name #define F77_OR_C_FUNC_(name,NAME) name #define HAVE_SYS_TYPES_H 1 #define HAVE_SYS_STAT_H 1 #define HAVE_STDLIB_H 1 #define HAVE_STRING_H 1 #define HAVE_MEMORY_H 1 #define HAVE_STRINGS_H 1 #define HAVE_INTTYPES_H 1 #define HAVE_STDINT_H 1 #define HAVE_UNISTD_H 1 configure: exit 77
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