Manik Mayur wrote:
Hi,
I am trying to install GROMACS-4.0.5, but while making mpirun with the
option --enable-mpi it gives the following sets of errors:
../gromacs-4.0.5/src/gmxlib/.libs/libgmx_mpi.so: undefined reference to
`ah_find'
../gromacs-4.0.5/src/gmxlib/.libs/libgmx_mpi.so: undefined reference to
`lam_ksignal'
../gromacs-4.0.5/src/gmxlib/.libs/libgmx_mpi.so: undefined reference to
`lam_arr_append'
../gromacs-4.0.5/src/gmxlib/.libs/libgmx_mpi.so: undefined reference to
`ah_delete'
../gromacs-4.0.5/src/gmxlib/.libs/libgmx_mpi.so: undefined reference to
`lam_errorstr'
../gromacs-4.0.5/src/gmxlib/.libs/libgmx_mpi.so: undefined reference to
`lam_ssi_cr_did'
../gromacs-4.0.5/src/gmxlib/.libs/libgmx_mpi.so: undefined reference to
`lam_rtrnameget'
../gromacs-4.0.5/src/gmxlib/.libs/libgmx_mpi.so: undefined reference to
`lam_mutex_trylock'
...................
...................
The important thing to note is that I have successfully compiled and
installed mpi version of mdrun on the same machine, for GROMACS-4.0.4.
What am I missing here?
Probably you've changed/removed your MPI library between configure and
make, or between versions of GROMACS, or something similar. Unpack a
clean GROMACS tarball and start again with configure.
Mark
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