-----Original Message----- From: [email protected] [mailto:[email protected]] On Behalf Of Justin A. Lemkul Sent: Tuesday, 30 June 2009 1:57 PM To: Gromacs Users' List Subject: Re: [gmx-users] Installation with non standard location of fftw3
Graham Kettlewell wrote: > Hi Justin, > > Thanks for your quick reply. It turns out that the stuff I posted was > malformed, as you pointed out, but it was a desperate attempt after a number > of goes, and I got that one wrong. I tried again using: > > -sh-3.2$ export CPPFLAGS=-I/hpc/software/packages/chemistry/fftw/include > -sh-3.2$ export LDFLAGS=-L/hpc/sofware/packages/chemistry/fftw/lib > -sh-3.2$ echo $CPPFLAGS > -I/hpc/software/packages/chemistry/fftw/include > -sh-3.2$ echo $LDFLAGS > -L/hpc/sofware/packages/chemistry/fftw/lib > > Is still got: > > checking for fftw3.h... yes > checking for main in -lfftw3f... no > configure: error: Cannot find fftw3f library > > exactly as before. I am kicking myself for posting the malformed stuff. Any > ideas? > How did you install FFTW? What are the contents of the /lib directory? I installed fftw3.2.1 using the tarball. As I remember it was: tar -xzvf fftw-3.2.1.tar.gz mkdir ../fftw cd fftw-3.2.1 ./configure --prefix /hpc/software/packages/chemistry/fftw make make install I retyped this, so... The contents of lib are: -sh-3.2$ cd lib/ -sh-3.2$ ls -l total 2196 -rw-r--r-- 1 grahamk uowstf 2230376 Jun 30 10:02 libfftw3.a -rwxr-xr-x 1 grahamk uowstf 951 Jun 30 10:02 libfftw3.la drwxr-xr-x 2 grahamk uowstf 4096 Jun 30 10:02 pkgconfig Cheers, graham -Justin > Cheers, > > **************************************** > Graham Kettlewell > Research assistant > Centre for Atmospheric Chemistry > University of Wollongong > [email protected] > Tel: (61 2) 4221 5120 > Fax: (61 2) 4221 4287 > Mob: 0414 309 524 > **************************************** > > -----Original Message----- > From: [email protected] [mailto:[email protected]] On > Behalf Of Justin A. Lemkul > Sent: Tuesday, 30 June 2009 1:25 PM > To: [email protected]; Discussion list for GROMACS users > Subject: Re: [gmx-users] Installation with non standard location of fftw3 > > > > Justin A. Lemkul wrote: > >>> -sh-3.2$ export CPPFLAGS=-I/hpc/software/packages/chemistry/fftw/include >>> -sh-3.2$ export LDFLAGS=-I/hpc/software/packages/chemistry/fftw/lib >>> >> You want this line to contain -L, not -I. > > That may have been a bit unclear; the LDFLAGS line should use -L, your > CPPFLAGS > line is fine. > > -Justin > -- ======================================== Justin A. Lemkul Ph.D. Candidate ICTAS Doctoral Scholar Department of Biochemistry Virginia Tech Blacksburg, VA jalemkul[at]vt.edu | (540) 231-9080 http://www.bevanlab.biochem.vt.edu/Pages/Personal/justin ======================================== _______________________________________________ gmx-users mailing list [email protected] http://lists.gromacs.org/mailman/listinfo/gmx-users Please search the archive at http://www.gromacs.org/search before posting! Please don't post (un)subscribe requests to the list. Use the www interface or send it to [email protected]. Can't post? Read http://www.gromacs.org/mailing_lists/users.php _______________________________________________ gmx-users mailing list [email protected] http://lists.gromacs.org/mailman/listinfo/gmx-users Please search the archive at http://www.gromacs.org/search before posting! Please don't post (un)subscribe requests to the list. Use the www interface or send it to [email protected]. Can't post? Read http://www.gromacs.org/mailing_lists/users.php
