leila karami wrote:
there is 1 fatal error in pdb2gmx command about pdb file containing 2
separate pdb file (protein:nmr structure, dna: x-ray structure). error
:[There were 38 missing atoms in molecule, if you want to use this
incomplete topology anyhow, use the option -missing](all of missing
atoms are H atom). what do I do instead of -missing option?
If all of the atoms are H, use -ignh and allow pdb2gmx to build in all those
that are necessary.
-Justin
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--
========================================
Justin A. Lemkul
Ph.D. Candidate
ICTAS Doctoral Scholar
Department of Biochemistry
Virginia Tech
Blacksburg, VA
jalemkul[at]vt.edu | (540) 231-9080
http://www.bevanlab.biochem.vt.edu/Pages/Personal/justin
========================================
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