You need to specify the name of your input file with the option '-f brady.pdb'
A.K. > -----Original Message----- > From: [email protected] [mailto:[email protected]] > On Behalf Of Asmaa Elsheshiny > Sent: 01 October 2009 11:37 > To: [email protected] > Subject: [gmx-users] pdb2gmx > > Dear All, > > I tried to use the following command line > > pdb2gmx -f -i brady.pdb -o brady.gro -p brady.top -ignh > > But I get the following error massage > > File input/output error: > eiwit.pdb > > So I tried to modify aminoacides.dat to include all the required aminoacids > residues but , I failed because these files are readonly . > So, How can I fix this problem. > > Cheers, > Asmaa > _______________________________________________ > gmx-users mailing list [email protected] > http://lists.gromacs.org/mailman/listinfo/gmx-users > Please search the archive at http://www.gromacs.org/search before posting! > Please don't post (un)subscribe requests to the list. Use the > www interface or send it to [email protected]. > Can't post? Read http://www.gromacs.org/mailing_lists/users.php _______________________________________________ gmx-users mailing list [email protected] http://lists.gromacs.org/mailman/listinfo/gmx-users Please search the archive at http://www.gromacs.org/search before posting! Please don't post (un)subscribe requests to the list. Use the www interface or send it to [email protected]. Can't post? Read http://www.gromacs.org/mailing_lists/users.php
