Dear gromacs pros, I need to calculate depth of DMPC bilayer penetration by my 14 aa long peptide. I'm not sure how to do it, but I have tried g_dist program and calculated distance between DMPC and peptide groups for every frame of simulation. Is that correct way of doing it or maybe there is a better way? I've got xvg file. First column is time and second is distance in Amstrongs?
Thank you
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