Hi Kirill, Although I can't directly address your question, I came across some recent work dealing with depth of penetration in lipid bilayers. May be the authors could help you. http://www3.interscience.wiley.com/journal/122351396/abstract <http://www3.interscience.wiley.com/journal/122351396/abstract>Hope this helps. Pavan
On Wed, Dec 23, 2009 at 11:27 AM, Kirill Bessonov <[email protected]>wrote: > Dear gromacs pros, > > I need to calculate depth of DMPC bilayer penetration by my 14 aa long > peptide. I'm not sure how to do it, but I have tried g_dist program and > calculated distance between DMPC and peptide groups for every frame of > simulation. Is that correct way of doing it or maybe there is a better > way? I've got xvg file. First column is time and second is distance in > Amstrongs? > > Thank you > > -- > gmx-users mailing list [email protected] > http://lists.gromacs.org/mailman/listinfo/gmx-users > Please search the archive at http://www.gromacs.org/search before posting! > Please don't post (un)subscribe requests to the list. Use the > www interface or send it to [email protected]. > Can't post? Read http://www.gromacs.org/mailing_lists/users.php >
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