Hi, your MPI installation has to be brogen. mpicc always has to be able to find libmpi. Please reinstall mpi correctly.
Roland On Sat, Jan 30, 2010 at 11:06 AM, Chandan Choudhury <[email protected]>wrote: > Hi gmx users !! > > On compiling GMX paralley, following error was encountered. How can I > tackle this. > Kindly help. > > > checking for mpicc... mpicc > checking whether the MPI cc command works... configure: error: Cannot > compile and link MPI code with mpicc > > The config.log file reads > > configure:4536: checking for mpicc > configure:4552: found /usr/lib/mpi/gcc/openmpi/bin/mpicc > configure:4563: result: mpicc > configure:4577: checking whether the MPI cc command works > configure:4601: mpicc -o conftest -g -O2 -I/usr/local/openmpi/include/ > conftest.c >&5 > /usr/lib/gcc/i586-suse-linux/4.4/../../../../i586-suse-linux/bin/ld: cannot > find -lmpi > collect2: ld returned 1 exit status > configure:4607: $? = 1 > configure: failed program was: > | /* confdefs.h. */ > | #define PACKAGE_NAME "gromacs" > | #define PACKAGE_TARNAME "gromacs" > #define PACKAGE_VERSION "4.0.7" > | #define PACKAGE_STRING "gromacs 4.0.7" > | #define PACKAGE_BUGREPORT "[email protected]" > | #define PACKAGE "gromacs" > | #define VERSION "4.0.7" > | #define GMX_SOFTWARE_SQRT > | #define GMX_QMMM_GAUSSIAN > | #define BUILD_TIME "Sat Jan 30 21:42:50 IST 2010" > | #define BUILD_USER "r...@shiraz" > | #define BUILD_MACHINE "Linux 2.6.31.5-0.1-desktop i686" > | /* end confdefs.h. */ > | #include <mpi.h> > | int > | main () > | { > | int argc; char **argv; MPI_Init(&argc,&argv); > | ; > | return 0; > | } > configure:4619: error: Cannot compile and link MPI code with mpicc > > > Chandan > > -- > Chandan kumar Choudhury > NCL, Pune > INDIA > > -- > gmx-users mailing list [email protected] > http://lists.gromacs.org/mailman/listinfo/gmx-users > Please search the archive at http://www.gromacs.org/search before posting! > Please don't post (un)subscribe requests to the list. Use the > www interface or send it to [email protected]. > Can't post? Read http://www.gromacs.org/mailing_lists/users.php > -- ORNL/UT Center for Molecular Biophysics cmb.ornl.gov 865-241-1537, ORNL PO BOX 2008 MS6309
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