I am using openmpi-1.4.1.
-- Chandan kumar Choudhury NCL, Pune INDIA On Sun, Jan 31, 2010 at 12:34 AM, Chandan Choudhury <[email protected]>wrote: > Hi Ronald !! > Thanks for your reply. > I recompiled the openmpi. But while executing ./configure --enable-mpi in > gromacs4.0.7 the following error is shown in config.log file. > > > configure:4536: checking for mpicc > configure:4552: found /usr/lib/mpi/gcc/openmpi/bin/mpicc > configure:4563: result: mpicc > configure:4577: checking whether the MPI cc command works > configure:4601: mpicc -o conftest -g -O2 conftest.c >&5 > conftest.c:15:17: error: mpi.h: No such file or directory > > configure:4607: $? = 1 > configure: failed program was: > | /* confdefs.h. */ > | #define PACKAGE_NAME "gromacs" > | #define PACKAGE_TARNAME "gromacs" > | #define PACKAGE_VERSION "4.0.7" > | #define PACKAGE_STRING "gromacs 4.0.7" > | #define PACKAGE_BUGREPORT "[email protected]" > | #define PACKAGE "gromacs" > | #define VERSION "4.0.7" > | #define GMX_SOFTWARE_SQRT > | #define GMX_QMMM_GAUSSIAN > | #define BUILD_TIME "Mon Feb 1 14:07:34 EST 2010" > | #define BUILD_USER "r...@corsica" > > | #define BUILD_MACHINE "Linux 2.6.31.5-0.1-desktop i686" > | /* end confdefs.h. */ > | #include <mpi.h> > | int > | main () > | { > | int argc; char **argv; MPI_Init(&argc,&argv); > | ; > | return 0; > | } > configure:4619: error: Cannot compile and link MPI code with mpicc > > > -- > Chandan kumar Choudhury > NCL, Pune > INDIA > > > On Sat, Jan 30, 2010 at 10:57 PM, Roland Schulz <[email protected]> wrote: > >> Hi, >> >> your MPI installation has to be brogen. mpicc always has to be able to >> find libmpi. Please reinstall mpi correctly. >> >> Roland >> >> On Sat, Jan 30, 2010 at 11:06 AM, Chandan Choudhury <[email protected]>wrote: >> >>> Hi gmx users !! >>> >>> On compiling GMX paralley, following error was encountered. How can I >>> tackle this. >>> Kindly help. >>> >>> >>> checking for mpicc... mpicc >>> checking whether the MPI cc command works... configure: error: Cannot >>> compile and link MPI code with mpicc >>> >>> The config.log file reads >>> >>> configure:4536: checking for mpicc >>> configure:4552: found /usr/lib/mpi/gcc/openmpi/bin/mpicc >>> configure:4563: result: mpicc >>> configure:4577: checking whether the MPI cc command works >>> configure:4601: mpicc -o conftest -g -O2 -I/usr/local/openmpi/include/ >>> conftest.c >&5 >>> /usr/lib/gcc/i586-suse-linux/4.4/../../../../i586-suse-linux/bin/ld: >>> cannot find -lmpi >>> collect2: ld returned 1 exit status >>> configure:4607: $? = 1 >>> configure: failed program was: >>> | /* confdefs.h. */ >>> | #define PACKAGE_NAME "gromacs" >>> | #define PACKAGE_TARNAME "gromacs" >>> #define PACKAGE_VERSION "4.0.7" >>> | #define PACKAGE_STRING "gromacs 4.0.7" >>> | #define PACKAGE_BUGREPORT "[email protected]" >>> | #define PACKAGE "gromacs" >>> | #define VERSION "4.0.7" >>> | #define GMX_SOFTWARE_SQRT >>> | #define GMX_QMMM_GAUSSIAN >>> | #define BUILD_TIME "Sat Jan 30 21:42:50 IST 2010" >>> | #define BUILD_USER "r...@shiraz" >>> | #define BUILD_MACHINE "Linux 2.6.31.5-0.1-desktop i686" >>> | /* end confdefs.h. */ >>> | #include <mpi.h> >>> | int >>> | main () >>> | { >>> | int argc; char **argv; MPI_Init(&argc,&argv); >>> | ; >>> | return 0; >>> | } >>> configure:4619: error: Cannot compile and link MPI code with mpicc >>> >>> >>> Chandan >>> >>> -- >>> Chandan kumar Choudhury >>> NCL, Pune >>> INDIA >>> >>> -- >>> gmx-users mailing list [email protected] >>> http://lists.gromacs.org/mailman/listinfo/gmx-users >>> Please search the archive at http://www.gromacs.org/search before >>> posting! >>> Please don't post (un)subscribe requests to the list. Use the >>> www interface or send it to [email protected]. >>> Can't post? Read http://www.gromacs.org/mailing_lists/users.php >>> >> >> >> >> -- >> ORNL/UT Center for Molecular Biophysics cmb.ornl.gov >> 865-241-1537, ORNL PO BOX 2008 MS6309 >> >> -- >> gmx-users mailing list [email protected] >> http://lists.gromacs.org/mailman/listinfo/gmx-users >> Please search the archive at http://www.gromacs.org/search before >> posting! >> Please don't post (un)subscribe requests to the list. Use the >> www interface or send it to [email protected]. >> Can't post? Read http://www.gromacs.org/mailing_lists/users.php >> > >
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