Try PRODRG server to build the molecule as well as to get topology file.
Though you might have to be careful in using this topology file.
Arun
Saumya wrote:
Hi all,
Well, I have been trying to make lipid bilayers using genconf of
gromacs from a single lipid molecule.
Can anyone tell me how to proceed with the simulation of lipid
bilayers starting with a single lipid molecule?
How can I obtain the .pdb file for a lipid?
Is there any manual that describes the procedure using Gromacs?
Hoping for some inputs.
Regards
Saumya
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