----- Original Message ----- From: Sai Pooja <[email protected]> Date: Sunday, June 20, 2010 15:09 Subject: Re: [gmx-users] Installing gromacs from git To: Discussion list for GROMACS users <[email protected]>
> History log: > 189 ./configure --enable-threads --enable-float > --prefix=/fs/home/sm868/fftw-3.2.2> 190 make> 191 clear> 192 make > install> 193 cd .. > 194 cd gromacs> 195 ls> 196 export > CPPFLAGS="-I/fs/home/sm868/fftw-3.2.2/include"> 197 export > LDFLAGS="-L/fs/home/sm868/fftw-3.2.2/lib"> 198 ./bootstrap > 199 ls> > 200 ./configure --prefix=/fs/home/sm868/gromacs> 201 make> 202 make > install> > Everything works till I get the following error with make install(after it > runs for a while) : > make[3]: *** [install-man1] Error 1> make[3]: Leaving > directory `/fs/home/sm868/gromacs/man/man1'> make[2]: *** [install-am] Error > 2> make[2]: Leaving directory `/fs/home/sm868/gromacs/man/man1' > make[1]: > *** [install-recursive] Error 1> make[1]: Leaving directory > `/fs/home/sm868/gromacs/man'> make: *** [install-recursive] Error 1 This is just make cleaning up after recursive invocation. The actual error is further up. Note that if configure failed according to your previous email, then there's no point to using make. Mark > On Sat, Jun 19, 2010 at 7:49 PM, Mark Abraham <[email protected]> wrote: > > > ----- Original Message ----- > From: Sai Pooja <[email protected]> > Date: Sunday, June 20, 2010 9:35 > Subject: Re: [gmx-users] Installing gromacs from git > To: Discussion list for GROMACS users <[email protected]> > > > I am sorry that was a typo in the mail. It was set to lib > > That makes it hard for us to have confidence in the rest of your command > lines - copying and pasting the results of "history" is a good way to avoid > such problems. > > As such I can only suggest looking for "error" in the last 100 lines of > config.log and seeing what you find. That, and trying it all again :-) > > Mark > > > > On Sat, Jun 19, 2010 at 7:28 PM, Justin A. Lemkul <[email protected]> wrote: > > > > > > Sai Pooja wrote: > > Hi, > > > > I followed the following steps to install gromacs from the git repository: > > > > 1) installed git > > 2) got a clone of gromacs using the anonymous option > > > > 3) installed fftw libraries using > > ./configure --enable-float --prefix=/fs/home/sm868 > > make > > make install > > > > 4)export CPPFLAGS=-I/fs/home/sm868/include > > export LDFLAGS=-L/fs/home/sm868/include > > > > 6)ran ./bootstrap > > 7)ran ./configure --prefix=/fs/home/sm868 > > 8)I get the error - checking for sqrt in -lm... yes > > checking for fftw3.h... yes > > checking for main in -lfftw3f... no > > configure: error: Cannot find fftw3f library > > > > > > You set your LDFLAGS to the /include subdirectory; you want to set it to > > the /lib subdirectory. > > > > -Justin > > > > Can someone help me with this? > > > > > > Pooja > > > > -- > > Quaerendo Invenietis-Seek and you shall discover. > > > > > > -- > > ======================================== > > > > Justin A. Lemkul > > Ph.D. Candidate > > ICTAS Doctoral Scholar > > MILES-IGERT Trainee > > Department of Biochemistry > > Virginia Tech > > Blacksburg, VA > > jalemkul[at]vt.edu | (540) 231-9080 > > http://www.bevanlab.biochem.vt.edu/Pages/Personal/justin > > > > ======================================== > > -- > > gmx-users mailing list [email protected] > > http://lists.gromacs.org/mailman/listinfo/gmx-users > > Please search the archive at http://www.gromacs.org/search before posting! > > Please don't post (un)subscribe requests to the list. Use the www > > interface or send it to [email protected]. > > Can't post? Read http://www.gromacs.org/mailing_lists/users.php > > > > > > > > -- > > Quaerendo Invenietis-Seek and you shall discover. > > -- > > gmx-users mailing list [email protected] > > http://lists.gromacs.org/mailman/listinfo/gmx-users > > Please search the archive at http://www.gromacs.org/search > > before posting! > > Please don't post (un)subscribe requests to the list. Use the > > www interface or send it to [email protected]. > > Can't post? Read http://www.gromacs.org/mailing_lists/users.php > > -- > gmx-users mailing list [email protected] > http://lists.gromacs.org/mailman/listinfo/gmx-users > Please search the archive at http://www.gromacs.org/search before posting! > Please don't post (un)subscribe requests to the list. Use the > www interface or send it to [email protected]. > Can't post? Read http://www.gromacs.org/mailing_lists/users.php > > > > -- > Quaerendo Invenietis-Seek and you shall discover. > -- > gmx-users mailing list [email protected] > http://lists.gromacs.org/mailman/listinfo/gmx-users > Please search the archive at http://www.gromacs.org/search > before posting! > Please don't post (un)subscribe requests to the list. Use the > www interface or send it to [email protected]. > Can't post? Read http://www.gromacs.org/mailing_lists/users.php
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