Hi, in general running in parallel (-j) doesn't help for install. I suggest to use -j only for "make" and not for "make install"
Roland On Fri, Jul 30, 2010 at 3:38 PM, Justin A. Lemkul <[email protected]> wrote: > > Hi, > > Thanks to the developers for the release of the 4.5 beta. Unfortunately, > I'm having a minor issue getting it to install. My system is Mac OSX 10.5.8 > (Intel), gcc 4.0.1, fftw 3.0.1. Installation procedure: > > $ ./configure --prefix=/usr/local/gmx_4.5_beta1 --with-gsl > CPPFLAGS="-I/usr/local/fftw/include -I/sw/include" > LDFLAGS="-L/usr/local/fftw/lib -L/sw/lib" > > $ make -j 2 > > $ sudo make -j 2 install > > Error message: > > Making install in gmxdemo > make[4]: Nothing to be done for `install-exec-am'. > test -z "/usr/local/gmx_4.5_beta1/share/gromacs/tutor/gmxdemo" || > ../../../config/install-sh -c -d > "/usr/local/gmx_4.5_beta1/share/gromacs/tutor/gmxdemo" > test -z "/usr/local/gmx_4.5_beta1/share/gromacs/tutor/gmxdemo" || > ../../../config/install-sh -c -d > "/usr/local/gmx_4.5_beta1/share/gromacs/tutor/gmxdemo" > mkdir: /usr/local/gmx_4.5_beta1/share/gromacs/tutor/gmxdemo: File exists > make[4]: *** [install-gmxdemoSCRIPTS] Error 1 > make[4]: *** Waiting for unfinished jobs.... > /usr/bin/install -c -m 644 cpeptide.pdb > '/usr/local/gmx_4.5_beta1/share/gromacs/tutor/gmxdemo' > make[3]: *** [install-am] Error 2 > make[2]: *** [install-recursive] Error 1 > make[1]: *** [install-recursive] Error 1 > make: *** [install-recursive] Error 1 > > > The funny part is that if I re-issue the exact same make install command as > above, the process completes. Is the issue related to the duplicate "test > -z" lines shown above? > > -Justin > > -- > ======================================== > > Justin A. Lemkul > Ph.D. Candidate > ICTAS Doctoral Scholar > MILES-IGERT Trainee > Department of Biochemistry > Virginia Tech > Blacksburg, VA > jalemkul[at]vt.edu | (540) 231-9080 > http://www.bevanlab.biochem.vt.edu/Pages/Personal/justin > > ======================================== > -- > gmx-users mailing list [email protected] > http://lists.gromacs.org/mailman/listinfo/gmx-users > Please search the archive at http://www.gromacs.org/search before posting! > Please don't post (un)subscribe requests to the list. Use the www interface > or send it to [email protected]. > Can't post? Read http://www.gromacs.org/mailing_lists/users.php > -- ORNL/UT Center for Molecular Biophysics cmb.ornl.gov 865-241-1537, ORNL PO BOX 2008 MS6309
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