----- Original Message ----- From: Nimesh Jain <[email protected]> Date: Friday, August 27, 2010 0:15 Subject: [gmx-users] RE: Molecule out of pbc box To: Discussion list for GROMACS users <[email protected]>
> Hi, > > Does anyone know if there is a way to put a molecule back in the pbc box in > gromacs. I am visualizing my sims in vmd and the molecule keeps going out of > the box. Is it normal or an artifact in vmd, is there a way to put the > molecule back in the box? please let me know. Yes. See http://www.gromacs.org/Documentation/Terminology/Periodic_Boundary_Conditions Mark
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