On Thu, Sep 30, 2010 at 12:31 PM, Francesco Oteri <[email protected] > wrote:
> Problem solved, > I've recompiled gromacs with option adding "-L/usr/lib -ldl" and after > setting the VMD_PLUGIN_PATH environment variable > gromacs works. > Glad that it works. But odd that you had to recompile. configure/cmake should have automatically figured out that it requires "-ldl". Could you send me your config.log (if you use configure) or your CMakeCache.txt (if you use cmake) of the gromacs versin without "-L/usr/lib -ldl"? Then I can check why it didn't work automatically. Roland > > > > On 30/09/2010 16:03, Roland Schulz wrote: > > Hi, > > Do you get any other messages before that last message? It might tell you > that you have to set the VMD_PLUGIN_PATH. > > GROMACS has to be compiled with dlopen support for this to work. Did you > compile with cmake or configure? Could you please look into the config.h and > see whether GMX_DLOPEN is set? > > Roland > > On Thu, Sep 30, 2010 at 9:30 AM, Francesco Oteri < > [email protected]> wrote: > >> Dear all, >> I would like to know how to analyze dcd trajectory in gromacs. >> I successfully installed gromacs, but if I use >> >> >> trjconv -f neck.dcd -s ../neck_model.pdb -o next.xtc >> >> I obtain the following error: >> >> >> Fatal error: >> Not supported in read_first_frame: neck.dcd >> >> >> >> Any suggestion? >> >> -- >> gmx-users mailing list [email protected] >> http://lists.gromacs.org/mailman/listinfo/gmx-users >> Please search the archive at >> http://www.gromacs.org/Support/Mailing_Lists/Search before posting! >> Please don't post (un)subscribe requests to the list. Use the >> www interface or send it to [email protected]. >> Can't post? Read http://www.gromacs.org/Support/Mailing_Lists >> > > > > -- > ORNL/UT Center for Molecular Biophysics cmb.ornl.gov > 865-241-1537, ORNL PO BOX 2008 MS6309 > > > > -- > gmx-users mailing list [email protected] > http://lists.gromacs.org/mailman/listinfo/gmx-users > Please search the archive at > http://www.gromacs.org/Support/Mailing_Lists/Search before posting! > Please don't post (un)subscribe requests to the list. Use the > www interface or send it to [email protected]. > Can't post? Read http://www.gromacs.org/Support/Mailing_Lists > -- ORNL/UT Center for Molecular Biophysics cmb.ornl.gov 865-241-1537, ORNL PO BOX 2008 MS6309
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