#ZHAO LINA# wrote:
Hi,
It will be so bad for me if it really does not exist.
I wish probably except asking Dr. google, someone else will be able to provide me some links.
I once just wanted to see some examples how they handled its topology even I got one from
PRODRG server, but it has problems later. Not so much in those specific simulations yet, just beginning stage.
If your problem is with deriving parameters, then do a thorough literature
search. Simulations with cholesterol have been done with numerous force fields,
so parameterization methodology and/or suitable parameters should be available.
-Justin
lina
________________________________________
From: [email protected] [[email protected]] on behalf
of Justin A. Lemkul [[email protected]]
Sent: Friday, October 01, 2010 8:35 PM
To: Discussion list for GROMACS users
Subject: Re: [gmx-users] cholesterol
#ZHAO LINA# wrote:
Hi,
Are there some tutorials handling the cholesterol stuff. I read several
literature but choked in some places.
I said this to someone just the other day: if it's not linked at
http://www.gromacs.org/Documentation/Tutorials or you can't find it with Google,
it probably doesn't exist.
What's more, "handling the cholesterol stuff" doesn't really lend itself to
getting useful help. What are you trying to do? Derive parameters? Build a
membrane? A micelle? An LDL complex?
-Justin
Thanks with best regards,
lina
--
========================================
Justin A. Lemkul
Ph.D. Candidate
ICTAS Doctoral Scholar
MILES-IGERT Trainee
Department of Biochemistry
Virginia Tech
Blacksburg, VA
jalemkul[at]vt.edu | (540) 231-9080
http://www.bevanlab.biochem.vt.edu/Pages/Personal/justin
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--
========================================
Justin A. Lemkul
Ph.D. Candidate
ICTAS Doctoral Scholar
MILES-IGERT Trainee
Department of Biochemistry
Virginia Tech
Blacksburg, VA
jalemkul[at]vt.edu | (540) 231-9080
http://www.bevanlab.biochem.vt.edu/Pages/Personal/justin
========================================
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