Hi, Thanks for your answer, I will spend some time to figure it out.
By the way, any links or literature or something relevant to it warmly welcome to introduce them to me. Best regards, lina ________________________________________ From: [email protected] [[email protected]] on behalf of Justin A. Lemkul [[email protected]] Sent: Friday, October 01, 2010 9:06 PM To: Discussion list for GROMACS users Subject: Re: [gmx-users] cholesterol #ZHAO LINA# wrote: > Hi, > > It will be so bad for me if it really does not exist. > I wish probably except asking Dr. google, someone else will be able to > provide me some links. > I once just wanted to see some examples how they handled its topology even I > got one from > PRODRG server, but it has problems later. Not so much in those specific > simulations yet, just beginning stage. > If your problem is with deriving parameters, then do a thorough literature search. Simulations with cholesterol have been done with numerous force fields, so parameterization methodology and/or suitable parameters should be available. -Justin > lina > > ________________________________________ > From: [email protected] [[email protected]] on behalf > of Justin A. Lemkul [[email protected]] > Sent: Friday, October 01, 2010 8:35 PM > To: Discussion list for GROMACS users > Subject: Re: [gmx-users] cholesterol > > #ZHAO LINA# wrote: >> Hi, >> >> Are there some tutorials handling the cholesterol stuff. I read several >> literature but choked in some places. >> > > I said this to someone just the other day: if it's not linked at > http://www.gromacs.org/Documentation/Tutorials or you can't find it with > Google, > it probably doesn't exist. > > What's more, "handling the cholesterol stuff" doesn't really lend itself to > getting useful help. What are you trying to do? Derive parameters? Build a > membrane? A micelle? An LDL complex? > > -Justin > >> Thanks with best regards, >> >> lina >> > > -- > ======================================== > > Justin A. Lemkul > Ph.D. Candidate > ICTAS Doctoral Scholar > MILES-IGERT Trainee > Department of Biochemistry > Virginia Tech > Blacksburg, VA > jalemkul[at]vt.edu | (540) 231-9080 > http://www.bevanlab.biochem.vt.edu/Pages/Personal/justin > > ======================================== > -- > gmx-users mailing list [email protected] > http://lists.gromacs.org/mailman/listinfo/gmx-users > Please search the archive at > http://www.gromacs.org/Support/Mailing_Lists/Search before posting! > Please don't post (un)subscribe requests to the list. Use the > www interface or send it to [email protected]. > Can't post? Read http://www.gromacs.org/Support/Mailing_Lists -- ======================================== Justin A. Lemkul Ph.D. Candidate ICTAS Doctoral Scholar MILES-IGERT Trainee Department of Biochemistry Virginia Tech Blacksburg, VA jalemkul[at]vt.edu | (540) 231-9080 http://www.bevanlab.biochem.vt.edu/Pages/Personal/justin ======================================== -- gmx-users mailing list [email protected] http://lists.gromacs.org/mailman/listinfo/gmx-users Please search the archive at http://www.gromacs.org/Support/Mailing_Lists/Search before posting! Please don't post (un)subscribe requests to the list. Use the www interface or send it to [email protected]. Can't post? Read http://www.gromacs.org/Support/Mailing_Lists -- gmx-users mailing list [email protected] http://lists.gromacs.org/mailman/listinfo/gmx-users Please search the archive at http://www.gromacs.org/Support/Mailing_Lists/Search before posting! Please don't post (un)subscribe requests to the list. Use the www interface or send it to [email protected]. Can't post? Read http://www.gromacs.org/Support/Mailing_Lists
