Have you considered reading the few papers describing the
principle of parameterization with the Martini FF? There are basic
recipes described and specific applications detailed.
Looking at cgmartini.nl might also help you getting more information and
reach people involved in Martini parameterization :))
XAvier.
On Oct 13, 2010, at 11:42 AM, George Khelashvili wrote:
Dear users,
I am trying to build Martini topology for monoolein molecule (I
assume that no such topology exists at this moment). It is obvious
that the tail part of the molecule is similar to DOPC lipid tail,
however I am not sure how to parametrize the head-group of
monoolein. I would appreciate if somebody could provide a guidance
on this matter.
Thank you,
George
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