Natalie Stephenson wrote:
Hey,
I've been performing a pull simulation of a protein, all seems to work
fine however after I convert the .xtc file into seperate .gro files and
load those into VMD to visualise the simulation something weird
happens. Every 50 frames or so a random bond within the backbone of the
protein (not necessarily near the point of pulling or unfolding) seems
to extend and spike out massively from the structure - does anyone know
why that would be happening?
Please see FAQ #9:
http://www.gromacs.org/Documentation/FAQs
-Justin
Thanks for your help
Natalie
--
========================================
Justin A. Lemkul
Ph.D. Candidate
ICTAS Doctoral Scholar
MILES-IGERT Trainee
Department of Biochemistry
Virginia Tech
Blacksburg, VA
jalemkul[at]vt.edu | (540) 231-9080
http://www.bevanlab.biochem.vt.edu/Pages/Personal/justin
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