Thanks loads for that!! I hadn't realised it was that simple! Natalie xxx ________________________________________ From: [email protected] [[email protected]] on behalf of Justin A. Lemkul [[email protected]] Sent: 09 December 2010 12:05 To: Discussion list for GROMACS users Subject: Re: [gmx-users] Pull simulation odditites when viewed in VMD
Natalie Stephenson wrote: > Hey, > > I've been performing a pull simulation of a protein, all seems to work > fine however after I convert the .xtc file into seperate .gro files and > load those into VMD to visualise the simulation something weird > happens. Every 50 frames or so a random bond within the backbone of the > protein (not necessarily near the point of pulling or unfolding) seems > to extend and spike out massively from the structure - does anyone know > why that would be happening? > Please see FAQ #9: http://www.gromacs.org/Documentation/FAQs -Justin > Thanks for your help > Natalie > > -- ======================================== Justin A. Lemkul Ph.D. Candidate ICTAS Doctoral Scholar MILES-IGERT Trainee Department of Biochemistry Virginia Tech Blacksburg, VA jalemkul[at]vt.edu | (540) 231-9080 http://www.bevanlab.biochem.vt.edu/Pages/Personal/justin ======================================== -- gmx-users mailing list [email protected] http://lists.gromacs.org/mailman/listinfo/gmx-users Please search the archive at http://www.gromacs.org/Support/Mailing_Lists/Search before posting! Please don't post (un)subscribe requests to the list. Use the www interface or send it to [email protected]. Can't post? Read http://www.gromacs.org/Support/Mailing_Lists -- gmx-users mailing list [email protected] http://lists.gromacs.org/mailman/listinfo/gmx-users Please search the archive at http://www.gromacs.org/Support/Mailing_Lists/Search before posting! Please don't post (un)subscribe requests to the list. Use the www interface or send it to [email protected]. Can't post? Read http://www.gromacs.org/Support/Mailing_Lists
