I get the residue versus time ( secondary structure graph) using do_dssp tool. I want to get the percentage value(alpha helix, beta sheet, coil ...) of secondary structure. For example:
Secondary structure percentage (%): Helix:51.6 B-sheet:0 Random coil:24.0 Turn:24.4 04 Ocak 2011 14:59 tarihinde Mark Abraham <[email protected]> yazdı: > On 4/01/2011 11:38 PM, ahmet yıldırım wrote: > > Dear Mark, > > I will do by using the g_analyze tool but I do not know how to use it. > > > There's a section in Appendix D of the manual for each tool, or you can use > the -h argument to the tool to get the same information. > > Either way, you haven't got the right tool. Hint: it's a "protein specific > analysis" > > Mark > > > > Thanks > > 2011/1/4 Mark Abraham <[email protected]> > >> On 4/01/2011 8:33 PM, ahmet yıldırım wrote: >> >>> Hi, >>> >>> How can I calculate the percentages (alpha helix, beta sheet, coil ...) >>> of secondary structure? >>> >> >> Look in manual section 7.4 for a suitable tool. >> >> Mark >> -- >> gmx-users mailing list [email protected] >> http://lists.gromacs.org/mailman/listinfo/gmx-users >> Please search the archive at >> http://www.gromacs.org/Support/Mailing_Lists/Search before posting! >> Please don't post (un)subscribe requests to the list. Use the www >> interface or send it to [email protected]. >> Can't post? Read http://www.gromacs.org/Support/Mailing_Lists >> > > > > -- > Ahmet YILDIRIM > > > > -- > gmx-users mailing list [email protected] > http://lists.gromacs.org/mailman/listinfo/gmx-users > Please search the archive at > http://www.gromacs.org/Support/Mailing_Lists/Search before posting! > Please don't post (un)subscribe requests to the list. Use the > www interface or send it to [email protected]. > Can't post? Read http://www.gromacs.org/Support/Mailing_Lists > -- Ahmet YILDIRIM
-- gmx-users mailing list [email protected] http://lists.gromacs.org/mailman/listinfo/gmx-users Please search the archive at http://www.gromacs.org/Support/Mailing_Lists/Search before posting! Please don't post (un)subscribe requests to the list. Use the www interface or send it to [email protected]. Can't post? Read http://www.gromacs.org/Support/Mailing_Lists
