ahmet yıldırım wrote:
Dear Mark,
I am using the Gromacs on the Ubuntu for month but have not encountered
any problems.I did a search in the file system of Ubuntu. I do not have
a GMXLIB folder in a file system.
What should I do?
If you're telling xpm2ps to use in.m2p, that file has to exist somewhere. The
error message is telling you that it does not exist in the working directory
(i.e., the directory where you're issuing the command), or the standard Gromacs
library directory
(http://www.gromacs.org/Documentation/Terminology/Environment_Variables#GMXLIB).
If you tell any Gromacs tool to use certain input, it has to exist; Gromacs
isn't going to magically create all the proper files for you.
-Justin
05 Ocak 2011 10:42 tarihinde Mark Abraham <[email protected]
<mailto:[email protected]>> yazdı:
On 5/01/2011 7:37 PM, ahmet yıldırım wrote:
Dear users,
I receive the following error when I entered the command "xpm2ps
-f ss.xpm -o ss.eps -di in.m2p"
Fatal error:
Library file in.m2p not found in current dir nor in default
directories.
(You can set the directories to search with the GMXLIB path
variable)
I am using the Gromacs 4.05 on the Ubuntu 9.1 Operation System.
I installed the Gromacs from Synaptic Package Manager.
I used echo $GMXDATA but it did not show anything. The pdb2gmx,
g_gyrate,...etc files are in the directory /usr/bin/.
The GMXRC file is in the directory
/usr/share/gromacs/shell-specific.
Are you following these instructions?
http://www.gromacs.org/Downloads/Installation_Instructions#Getting_access_to_GROMACS_after_installation
Mark
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--
Ahmet YILDIRIM
--
========================================
Justin A. Lemkul
Ph.D. Candidate
ICTAS Doctoral Scholar
MILES-IGERT Trainee
Department of Biochemistry
Virginia Tech
Blacksburg, VA
jalemkul[at]vt.edu | (540) 231-9080
http://www.bevanlab.biochem.vt.edu/Pages/Personal/justin
========================================
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