Mr Bernard Ramos wrote:
yup, i typed g_luck and it worked. the error that shows is
----------------------------------------------------------
File input/output error:
filename.pdb
For more information, visit ............
----------------------------------------------------------
Then "filename.pdb" doesn't exist. You need to specify the actual name of your
input .pdb file; "filename.pdb" is just a generic name that shows you how to use
the program.
-Justin
--- On *Mon, 1/31/11, Justin A. Lemkul /<[email protected]>/* wrote:
From: Justin A. Lemkul <[email protected]>
Subject: Re: [gmx-users] luck
To: "Discussion list for GROMACS users" <[email protected]>
Date: Monday, January 31, 2011, 12:11 PM
Mr Bernard Ramos wrote:
> Hi everyone!
> I have two questions.
> 1. after I installed gromacs 4.5.3 and "which mdrun" was able to
give the correct path, I was not able to run "luck". Instead, "luck"
gives an error "command not found". Is this ok? What went wrong? Do
I need to install again gromacs?
>
The program is now called g_luck.
> 2. I tried doing "pdb2gmx". The error points the structure file
"*.pdb" as the error. Does this in dicate that the program was not
installed properly or there is an error with the pdb file.
>
If the program has given you a fatal error, then the program is
correctly installed and working. It is your input that is somehow
wrong. Without the actual error message, it's impossible to say
what's wrong.
-Justin
> Thanks
>
-- ========================================
Justin A. Lemkul
Ph.D. Candidate
ICTAS Doctoral Scholar
MILES-IGERT Trainee
Department of Biochemistry
Virginia Tech
Blacksburg, VA
jalemkul[at]vt.edu | (540) 231-9080
http://www.bevanlab.biochem.vt.edu/Pages/Personal/justin
========================================
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--
========================================
Justin A. Lemkul
Ph.D. Candidate
ICTAS Doctoral Scholar
MILES-IGERT Trainee
Department of Biochemistry
Virginia Tech
Blacksburg, VA
jalemkul[at]vt.edu | (540) 231-9080
http://www.bevanlab.biochem.vt.edu/Pages/Personal/justin
========================================
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