majid hasan wrote:
Dear All,
I created .pdb file for dna using gabedit. But when I try to create the
topology file I get this error: Fatal error:
There is a dangling bond at at least one of the terminal ends and the
force field does not provide terminal entries or files. Edit a .n.tdb
and/or .c.tdb file.
Output of pdb2gmx, and my input pdb files are attached. Could anyone
please suggest why this is happening?
Nothing is attached.
-Justin
Thanks,
Majid
--
========================================
Justin A. Lemkul
Ph.D. Candidate
ICTAS Doctoral Scholar
MILES-IGERT Trainee
Department of Biochemistry
Virginia Tech
Blacksburg, VA
jalemkul[at]vt.edu | (540) 231-9080
http://www.bevanlab.biochem.vt.edu/Pages/Personal/justin
========================================
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