shiva birgani wrote:
Dear all
I have simulated two different proteins (A and B). I need to compare their flexibility. RMSF help to examine their flexibilty individually, but I want to campare them with each other.
Do anybody know a solution to this? Would you please help me in this regard?


Is it not just a matter of comparing the RMSF between the two proteins?

-Justin

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Justin A. Lemkul
Ph.D. Candidate
ICTAS Doctoral Scholar
MILES-IGERT Trainee
Department of Biochemistry
Virginia Tech
Blacksburg, VA
jalemkul[at]vt.edu | (540) 231-9080
http://www.bevanlab.biochem.vt.edu/Pages/Personal/justin

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