On 2/06/2011 5:03 PM, Chandan Choudhury wrote:
Hello gmx-users,
I am trying to install gmx-4.5.4 on a HPC Linux cluster x86_64.
1. I installed fftw 3.2.2
./configure --prefix /soft/sudip/abc/execs/fftw/
--enable-single --enable-threads
2. Installing Gromacs : CPPFLAGS and LDFLAGS were written in bashrc file
a) ./configure --prefix=/soft/sudip/abc/execs/gromacs/
execute successfully without any complain.
b) make
/usr/bin/ld:
/soft/sudip/abc/execs/fftw/lib/libfftw3f.a(apiplan.o): relocation
R_X86_64_32 against `a local symbol' can not be used when making a
shared object; recompile with -fPIC
/soft/sudip/abc/execs/fftw/lib/libfftw3f.a: could not
read symbols: Bad value
collect2: ld returned 1 exit status
make[3]: *** [libmd.la <http://libmd.la>] Error 1
make[3]: Leaving directory
`/soft/sudip/abc/untar/gromacs-4.5.4/src/mdlib'
make[2]: *** [all-recursive] Error 1
make[2]: Leaving directory
`/soft/sudip/abc/untar/gromacs-4.5.4/src'
make[1]: *** [all] Error 2
make[1]: Leaving directory
`/soft/sudip/abc/untar/gromacs-4.5.4/src'
make: *** [all-recursive] Error 1
shows problem.
Couldnot understand the origin of problem. Kndly let me know if some
information is missing.
See http://www.gromacs.org/Downloads/Installation_Instructions, where
this problem is discussed.
Mark
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