Thanks everyone. It helped me in installation. -- Chandan kumar Choudhury NCL, Pune INDIA
On Fri, Jun 3, 2011 at 10:36 PM, Joshua L. Phillips <[email protected] > wrote: > Add --with-pic when configuring fftw. > > -- Josh > > On Thu, 2011-06-02 at 15:16 +0800, Jianguo Li wrote: > > The error message already shows some hints. Try recompile FFTW with > > -fPIC. > > Jianguo > > > > > > > > > > ______________________________________________________________________ > > From: Chandan Choudhury <[email protected]> > > To: gmx-users <[email protected]> > > Sent: Thursday, 2 June 2011 15:03:03 > > Subject: [gmx-users] gmx4.5.4 installation help > > > > Hello gmx-users, > > > > I am trying to install gmx-4.5.4 on a HPC Linux cluster x86_64. > > 1. I installed fftw 3.2.2 > > ./configure --prefix /soft/sudip/abc/execs/fftw/ > > --enable-single --enable-threads > > 2. Installing Gromacs : CPPFLAGS and LDFLAGS were written in bashrc > > file > > a) ./configure --prefix=/soft/sudip/abc/execs/gromacs/ > > execute successfully without any complain. > > b) make > > /usr/bin/ld: > /soft/sudip/abc/execs/fftw/lib/libfftw3f.a(apiplan.o): relocation > R_X86_64_32 against `a local symbol' can not be used when making a shared > object; recompile with -fPIC > > /soft/sudip/abc/execs/fftw/lib/libfftw3f.a: could not > > read symbols: Bad value > > collect2: ld returned 1 exit status > > make[3]: *** [libmd.la] Error 1 > > make[3]: Leaving directory > > `/soft/sudip/abc/untar/gromacs-4.5.4/src/mdlib' > > make[2]: *** [all-recursive] Error 1 > > make[2]: Leaving directory > > `/soft/sudip/abc/untar/gromacs-4.5.4/src' > > make[1]: *** [all] Error 2 > > make[1]: Leaving directory > > `/soft/sudip/abc/untar/gromacs-4.5.4/src' > > make: *** [all-recursive] Error 1 > > > > shows problem. > > > > Couldnot understand the origin of problem. Kndly let me know if some > > information is missing. > > > > Chandan > > > > -- > > Chandan kumar Choudhury > > NCL, Pune > > INDIA > > > > -- > > gmx-users mailing list [email protected] > > http://lists.gromacs.org/mailman/listinfo/gmx-users > > Please search the archive at > http://www.gromacs.org/Support/Mailing_Lists/Search before posting! > > Please don't post (un)subscribe requests to the list. Use the > > www interface or send it to [email protected]. > > Can't post? Read http://www.gromacs.org/Support/Mailing_Lists > > -- > Joshua L. Phillips > Ph.D. Candidate - School of Engineering > University of California, Merced > [email protected] > > > -- > gmx-users mailing list [email protected] > http://lists.gromacs.org/mailman/listinfo/gmx-users > Please search the archive at > http://www.gromacs.org/Support/Mailing_Lists/Search before posting! > Please don't post (un)subscribe requests to the list. Use the > www interface or send it to [email protected]. > Can't post? Read http://www.gromacs.org/Support/Mailing_Lists >
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