I suppose you are writing a extr.pdb form g_anaeig. Try writing down extr. xtc and load it onto a pdb/gro using vmd. Then it should not be a problem.
Best Wishes, Sarath > Did you make the molecules whole and removed jumps (in case of a multimer) > prior to filtering? > > Cheers, > > Tsjerk > > On Jun 24, 2011 8:10 PM, "Kavyashree M" <[email protected]> wrote: > > Dear user, > > When projection of a trajectory (50ns) on an eigen vector > was visualised in pymol, there was broken chains, but when > I projected the simulation (continued for 50 more ns ie., > total 100ns) this broken chain was not seen why? > > Thanking you > With Regards > M. Kavyashree > > -- > gmx-users mailing list [email protected] > http://lists.gromacs.org/mailman/listinfo/gmx-users > Please search the archive at > http://www.gromacs.org/Support/Mailing_Lists/Search before posting! > Please don't post (un)subscribe requests to the list. Use the > www interface or send it to [email protected]. > Can't post? Read http://www.gromacs.org/Support/Mailing_Lists > -- > gmx-users mailing list [email protected] > http://lists.gromacs.org/mailman/listinfo/gmx-users > Please search the archive at > http://www.gromacs.org/Support/Mailing_Lists/Search before posting! > Please don't post (un)subscribe requests to the list. Use the > www interface or send it to [email protected]. > Can't post? Read http://www.gromacs.org/Support/Mailing_Lists -- gmx-users mailing list [email protected] http://lists.gromacs.org/mailman/listinfo/gmx-users Please search the archive at http://www.gromacs.org/Support/Mailing_Lists/Search before posting! Please don't post (un)subscribe requests to the list. Use the www interface or send it to [email protected]. Can't post? Read http://www.gromacs.org/Support/Mailing_Lists
