Sir, Yes exactly I did the same. I will try with this option now. Thanks.
With Regards M. Kavyashree On Sat, Jun 25, 2011 at 2:01 AM, Sarath Chandra Dantu <[email protected]>wrote: > I suppose you are writing a extr.pdb form g_anaeig. Try writing down extr. > xtc and load it onto a pdb/gro using vmd. Then it should not be a problem. > > Best Wishes, > > Sarath > > > Did you make the molecules whole and removed jumps (in case of a > multimer) > > prior to filtering? > > > > Cheers, > > > > Tsjerk > > > > On Jun 24, 2011 8:10 PM, "Kavyashree M" <[email protected]> wrote: > > > > Dear user, > > > > When projection of a trajectory (50ns) on an eigen vector > > was visualised in pymol, there was broken chains, but when > > I projected the simulation (continued for 50 more ns ie., > > total 100ns) this broken chain was not seen why? > > > > Thanking you > > With Regards > > M. Kavyashree > > > > -- > > gmx-users mailing list [email protected] > > http://lists.gromacs.org/mailman/listinfo/gmx-users > > Please search the archive at > > http://www.gromacs.org/Support/Mailing_Lists/Search before posting! > > Please don't post (un)subscribe requests to the list. Use the > > www interface or send it to [email protected]. > > Can't post? Read http://www.gromacs.org/Support/Mailing_Lists > > -- > > gmx-users mailing list [email protected] > > http://lists.gromacs.org/mailman/listinfo/gmx-users > > Please search the archive at > > http://www.gromacs.org/Support/Mailing_Lists/Search before posting! > > Please don't post (un)subscribe requests to the list. Use the > > www interface or send it to [email protected]. > > Can't post? Read http://www.gromacs.org/Support/Mailing_Lists > > > -- > gmx-users mailing list [email protected] > http://lists.gromacs.org/mailman/listinfo/gmx-users > Please search the archive at > http://www.gromacs.org/Support/Mailing_Lists/Search before posting! > Please don't post (un)subscribe requests to the list. Use the > www interface or send it to [email protected]. > Can't post? Read http://www.gromacs.org/Support/Mailing_Lists >
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