vidhya sankar wrote:
Dear Justin,
Thank you for your patience reply.
When i use g_morph i have got rms-interm.xvg file. the second and third
colum of this represents what value. i am not able to understand this
Read the headers of the .xvg file. Presumably it is RMSD.
Also With reference to what structure the rmsd is calculated
g_morph -h:
"Finally the RMSD with respect to both input structures can be computed if
explicitly selected (-or option). In that case an index file may be read to
select what group RMS is computed from."
The RMSD is relative to whatever group you told g_morph to use.
-Justin
--
========================================
Justin A. Lemkul
Ph.D. Candidate
ICTAS Doctoral Scholar
MILES-IGERT Trainee
Department of Biochemistry
Virginia Tech
Blacksburg, VA
jalemkul[at]vt.edu | (540) 231-9080
http://www.bevanlab.biochem.vt.edu/Pages/Personal/justin
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