hello sir, I did dynamics for 5ns for my protein. i submitted my run in cluster.. i got my output.. when i go for rmsd and gyrate analysis i got plot for only 1.2ns out of 5ns..
i dono what is the problem.. is this because of low runtime in cluster.. even i gave 200hours in cluster.. i searched in gromacs list.. but i didnt get answer for my query.. can anyone please help me with your answer.. it ll be helpful for me.. Thanking you,
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