On 12/01/2012 5:39 PM, priya thiyagarajan wrote:
hello sir,
I did dynamics for 5ns for my protein. i submitted my run in cluster..
i got my output.. when i go for rmsd and gyrate analysis i got plot
for only 1.2ns out of 5ns..
i dono what is the problem..
is this because of low runtime in cluster..
even i gave 200hours in cluster..
i searched in gromacs list.. but i didnt get answer for my query..
can anyone please help me with your answer..
Nobody can help you given the available information. Please consider the
advice here: http://www.gromacs.org/Support
Mark
--
gmx-users mailing list [email protected]
http://lists.gromacs.org/mailman/listinfo/gmx-users
Please search the archive at
http://www.gromacs.org/Support/Mailing_Lists/Search before posting!
Please don't post (un)subscribe requests to the list. Use the
www interface or send it to [email protected].
Can't post? Read http://www.gromacs.org/Support/Mailing_Lists
