Hi all I'm also having trouble with g_helixorient and the data it is giving me.
My desired end goal is to track the average tilt of a helix compared to the global Z-axis, but a change in the tilt of the helix over time to its reference structure (frame 0) will suffice. How exactly do I interpret the tilt angles from g_helixorient? If I specify 4 CA atoms in the center of my helix, it seems to give me a running average of some sort with 0 angle angle 0. What is this angle in relation to? -- ================================================================== Peter C. Lai | University of Alabama-Birmingham Programmer/Analyst | KAUL 752A Genetics, Div. of Research | 705 South 20th Street [email protected] | Birmingham AL 35294-4461 (205) 690-0808 | ================================================================== -- gmx-users mailing list [email protected] http://lists.gromacs.org/mailman/listinfo/gmx-users Please search the archive at http://www.gromacs.org/Support/Mailing_Lists/Search before posting! Please don't post (un)subscribe requests to the list. Use the www interface or send it to [email protected]. Can't post? Read http://www.gromacs.org/Support/Mailing_Lists
